Query= MSMg01no048_n01.b1 MSMg01no048_n01.b1 CHROMAT_FILE:
MSMg01no048_n01.b1 PHD_FILE: MSMg01no048_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:10 2005
(753 letters)
>mm_chrX_96244424_96245576
Length = 1153
Score = 1156 bits (598), Expect = 0.0
Identities = 663/698 (94%), Gaps = 21/698 (3%)
Strand = Plus / Minus
Query: 1 tccctaaaacccaggacttcttgcaatgataggcctttatattatcaaaggcgcttcatc 60
|||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct: 677 tccctaaaacccaggacttcttgcaatgctaggcaagtatattatcaaaggtgcttcatc 618
Query: 61 cttagcctctctgttttttgcccattgagaaggtcatgctggagtacaggctatgtgagc 120
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 617 cttagcctctctgttttttgcccattgagaaggtcgtgctggggtacaggctatgtgagc 558
Query: 121 cagttgtttagagccaagcccttcctacataaagtctctgaccctgcccggcctgatttg 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 557 cagttgtttagagccaagcccttcctacaaaaagtctctgaccctgcccggcctgatttg 498
Query: 181 acctcagcctggagcaaaatggtgggatacaagtccatacctcagacaagccagtctttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 acctcagcctggagcaaaatggtgggatacaagtccatacctcagacaagccagtctttg 438
Query: 241 gccagcctagataaaggacaggaaatcccaggccagctcccctggaggttgctccatcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gccagcctagataaaggacaggaaatcccaggccagctcccctggaggttgctccatcta 378
Query: 301 ctgcaggaacagagctgccgctcatgtagagcttcctctgtggtgaggaagctgcctcgt 360
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 377 ctgcaggaacagagctgccgctcaggcagagcttcctctgtggtgaggaagctgcctcgt 318
Query: 361 cagccccaactgccctggctgctgggtgtggtttgtggaaaacaggcagagctgagtgtc 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cagccccagctgccctggctgctgggtgtggtttgtggaaaacaggcagagctgagtgtc 258
Query: 421 aggagacctgggtcccaaatcttgcctcgttgcaaaccgttccattcctctcctgagcct 480
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 257 aggagacctgggtcccaaatcttgcctcgttgcaaaccgttcccttcctctcctgag--- 201
Query: 481 cagctggagactgccgaggatcacagcagagggatggggctgggggagctacttggtcag 540
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ------------------gatcacagcagagggatggggctgggggagctacttggtcag 159
Query: 541 actactctgagagcacacagggtcctggaaacggaagaaatgggcctggttgctctcctc 600
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 158 actactctgagagcacacagggtcctggaaacgaaagaaatgggcctggttgctctcctc 99
Query: 601 atcacttgccacaggaaggagtgactgagttggtatttctctctggtctgattcactctc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 atcacttgccacaggaaggagtgactgagttggtatttctctctggtctgattcactctc 39
Query: 661 atagtccccactgtgggcatagctcatcctcatttctg 698
|||||||||||||||||| |||||||||||||||||||
Sbjct: 38 atagtccccactgtgggcctagctcatcctcatttctg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 753
Length of database: 1153
Length adjustment: 10
Effective length of query: 743
Effective length of database: 1143
Effective search space: 849249
Effective search space used: 849249
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no048_n01.g1 MSMg01no048_n01.g1 CHROMAT_FILE:
MSMg01no048_n01.g1 PHD_FILE: MSMg01no048_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:10 2005
(679 letters)
>mm_chrX_96107514_96108592
Length = 1079
Score = 1193 bits (617), Expect = 0.0
Identities = 665/685 (97%), Gaps = 11/685 (1%)
Strand = Plus / Plus
Query: 1 ttctattgaccaaaaacccttagcaagctgagcgttga---cgtaagtacccgttctctt 57
|||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||
Sbjct: 201 ttctattgaccaaaaacccttagcaagctgag---tgaggtcgtaagtacctgttctctt 257
Query: 58 ctgaggctgagccaggaggagccctcaaggctagaaatgtaaaccagacaacaactaata 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ctgaggctgagccaggaggagccctcaaggctagaaatgtaaaccagacaacaactaata 317
Query: 118 aataattaaatttactaaataaaaaataaaatacaaagagttggaacaaagtagtttatg 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aataattaaatttactaaataaaaaataaaatacaaagagttggaacaaagtagtttatg 377
Query: 178 aataaaaccatggatacaggagcttaagattacaatcaacatactgttattaatcaagag 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aataaaaccatggatacaggagcttaagattacaatcaacatactgttattaatcaagag 437
Query: 238 gaaaaggtacaatctttttgcttgcttttttgaaacattacccactctttagcccaggct 297
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gaaaaggtacaatttttttgcttgcttttttgaaacattacccactctttagcccaggct 497
Query: 298 gacctcagagttatggaaatccttctgtgtcagtgtcctaagtgctggagttgcaagttc 357
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 498 gacctcagagttatggaaatccttctgtgccagtgtcctaagtgctggagttgcaagttc 557
Query: 358 atgtcatgaagtccagccaaaaagtggcttttttttttttt---agaacaacaacaacaa 414
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 558 atgtcatgaagtccagccaaaaagtggcttttttttttttttttagaaaaacaacaacaa 617
Query: 415 caacaacaaaaaaaaaaaaacaaaaacagaaaatgaagagcattggctcactttgaaaac 474
||| || ||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 618 caaaaa-aaaaaaaaaaaaa-aaaaacagaaaattaagagcattggctcactttgaaaac 675
Query: 475 aaaattagaattagagctaagcttgtggtacaaacctatcaccctagcactttggaggct 534
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 676 aaaattagaattagagctaagcttgtggtacaaacctataatcctagcactttggaggct 735
Query: 535 aaggcaggagtattacaaattcaagtcctactaggctattttgctagactctgtctcaaa 594
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 736 aaggcaggagtattacaaattcaagtcctactaggctattttgttagactctgtctcaaa 795
Query: 595 aagaaaacatatttttggagctaagattgtaacttagtaaacagcttgtctagccaaaac 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 aagaaaacatatttttggagctaagattgtaacttagtaaacagcttgtctagccaaaac 855
Query: 655 aagcgcataaagaaaaagtcctggg 679
|||||||||||||||||||||||||
Sbjct: 856 aagcgcataaagaaaaagtcctggg 880
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space: 715161
Effective search space used: 715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
