BAC Information

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BAC

Clone NameMSMg01-048O09
ChromosomeX (Build37)
Map Location 68,607,327 - 68,608,087
singlet/doubletsinglet
Overlap genenone
Upstream geneIds, 1110012L19Rik, 4930567H17Rik, LOC100040304, LOC628002, LOC628012, BC023829, EG547447, LOC666981, LOC100040409, LOC628053, LOC100040432, EG280121, LOC666993, Ppia-psx_466.1, EG628080, G630014P10Rik, LOC667013, Mtm1
Downstream geneMtmr1, Cd99l2, LOC667017, Hmgb3, LOC100040549, Gpr50, LOC654357, 2610030H06Rik, Gm1141, Prrg3, Fate1, Cnga2, Magea4, Gabre
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048O09.T7 (MSMg01no048_o09.b1)MSMg01-048O09.TJ (MSMg01no048_o09.g1)
ACCAG278539AG278540
length1,2151,255
length of high quality
(start - end)		763 (36 - 798)733 (81 - 813)
definitionCHROMAT_FILE: MSMg01no048_o09.b1 PHD_FILE: MSMg01no048_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:20 2005CHROMAT_FILE: MSMg01no048_o09.g1 PHD_FILE: MSMg01no048_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATGGGCCTAXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAAAG
ATGCTCTGGTACCGTTAAAAAAGATGATAGGAGTCATCCCAACATGATTC
TTCCTGTTGTATAGGTAACACGGAACCTTTAGGATGTATTATAGGTCAGT
GAAGTTCATTTGACCACTCAAACCATAAAACAGAACCACTAGCTATTTTT
CTGCATTCAAGCCTGGCTTGAAAATAAACTGGAAGATGGAGAAAAATAAA
TTCCAGCGGGAAGTATTAATCAAAACATTAAGAGAATAAATAGATTTGTT
TGTAAGAAAAAAGTTATATACAGACCTCATTTCTGGGCCTTACTGCTCGT
ATCCTAAGGGCCTCCCATATCAATAGTAGCCTTCCACTGCTGCAGCAAGC
CTTCTAATAGAAAAGGTTTTCTTACCCCCCACCCCCATTCCCTCCGTATG
CTTGTCATGTCCTCCTTCTCAGACTGGAAACCTACCCTGCTGAACATCCC
CTTTTCCTTACAAGATCTGAGACTGACCTAAACAGCACACATATTGATGT
TTGCAGGGTTTTATTCAGTTCTTTGATTTAACCTAGATGAATATAATGTT
ATTCATGGGAATTGAATGGATTTTAGATAACCTCCTTAAAACACCTACTA
TGATCTTTTATAAGGGAGATCAAGGGGCCATTAAAGAAATGGACAAGGAA
ATCAAGAGGGAAATTATACTCCTGTGGCCATACTATTGTAAGTTAACCTG
CATCTAAGTCCTGAGGACAAAAGGAAAATGGCTTTTGCCTGTTGTAGCTG
TGGTCAGAGGGGCTACCTCAAATGAGAATACATCTTGTTGGAAAGACTAC
TGGAAGGAAGTTCAGATGTTATCATTTTCCAAAGTCCTCCTAAATGCTTA
GGCCTCTGTGAAGTGGGAACAATCAGCCAACTATCTAATTCAATAAACTC
CTGGAGCCCCCGGGATGGGCCTTTTAGGTCTATAATTTGGGAAAGCCCTC
TCCCCGAAAAGGGGGCTGTAATACACAAAAACTGGTTGAAAAAAAACCCG
GGAAAAGATTTTTCTTAAAATGACAGTCCCCTCCTTTGGTAAAATTGGGC
CTCTCCCTCCCCCCCCCCCATTTTCTTTTCTCTTTTTGATATATATTGGG
TAAGGGGCTTCTTTCTAACATTTTTTCTTTTTTATTTATTCTAATGACAT
TAATCCTTTATGTCG

TTTTTTGAGATTGGAGNCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTTTATAATGGGCCTGTCGCTGGACCTTCTTT
TCCTCAGGCTCTTCTCCATTTCCATCCCTGTAATTCTTTCAGACAGGAAC
AATTATGGGTCAGAATTGTGTGGGATGAGAGCCCCATCCCTCACTTAATA
CCCTGTCTTCCTGCTGGAGGTGGGCTCTATAAGTTCCCTCTTCCTACTGT
CTGGAGGTTCATCTTTGACTCCTGAGAGTCTCTTACTGCCTAGGTTTCTG
ATGCATTCTGGAGGGTTCCCCCAACCTCCTATTTCCTGAGGTTGCCTGTT
TCCATTCTTTCTGCTGGCCTTCAGGGCTTCAGTCCTTTTCTCTCACCTAG
TAACAGATCAGGTTCTCCTCCCCCCTCTCTACCCTGCCCACTGTCCCTCC
CAGGTCCCTCCCTCCCCACTTGTGATTGCTTTCTTCTCTCTCCCAAGTGG
GACTGAGGCATCCTCACTTGGGCACTTCAGCTTGTTGACTAATTTGAGTT
CTGTGGACTGTATCTTAGGTATCCTGTACTTTTTTTTTTGGCTAATATCC
ACTTATTAGTGAGTATATACCATGCATGTCCTTTTGGATCTGAGTTACCT
CACTCAGGATGATATTTTCTAGCTCCATCCATTTGCCTGCAAAGCTCAGA
ATGTCCTTGTCCTTAATATCTGAGTAGTACTCCATTGTGTAAATGAACCA
CATTTTCTGTATCCATTCTTCTGTCTTGGGACATCTGGGTTGTTTCCAGC
TTCTACCTATCACAAACAAGGGTGCTATGCACATAGTAAAACATGTGTCC
CTGTGGCCTGTTGCGGCATCTTTTAGGTATATTCCCAAGAAAGGTATAAC
TGGGTCTTCAAGTCGATCTATTTTCAACTTTTTGAGTAAACTTCACACTT
ATTTCTAAAGTGGNTGTGCCCGTTTTGCAATCCCCCCCTGCTAGGGATAA
ATAGATTTATTTCTTCTTTCCCTTTTCTTTCTCAAAACTTGGTGTTTTAC
CCGAGAGGTTTCGTCTTTTACCCCTTTTCGATTGTGGGAATAGGGTGCTT
CTCTCCGGTCTGCATTTTTTTTATTTATTTTNTTTCATATTGTTTAGACT
TACTTATAATATCTTATATTATTGTTTTCCTTTCTTTTGTCATTCTATCC
TCTTTGTANATTTTTTANTATTATTCTTCATCCTTCTTTCTTTTTATTGT
TTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_o09.b1 MSMg01no048_o09.b1 CHROMAT_FILE:
MSMg01no048_o09.b1 PHD_FILE: MSMg01no048_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:20 2005
         (763 letters)



>mm_chrX_68607123_68608287
          Length = 1165

 Score = 1392 bits (720), Expect = 0.0
 Identities = 750/766 (97%), Gaps = 12/766 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcc-aaagatgctctggta------ccgttaaaaaagatgataggagtcatcccaa 57
           ||||||| |||||||||||||||      ||     ||||||||||||||||||||||||
Sbjct: 965 gaattccaaaagatgctctggtaaaaggtcc-----aaaagatgataggagtcatcccaa 911

                                                                       
Query: 58  catgattcttcctgttgtataggtaacacggaacctttaggatgtattataggtcagtga 117
           |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 910 catgattctttctgttgtataggtaacaaggaacctttaggatgtattataggtcagtga 851

                                                                       
Query: 118 agttcatttgaccactcaaaccataaaacagaaccactagctatttttctgcattcaagc 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 agttcatttgaccactcaaaccataaaacagaaccactagctatttttctgcattcaagc 791

                                                                       
Query: 178 ctggcttgaaaataaactggaagatggagaaaaataaattccagcgggaagtattaatca 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 ctggcttgaaaataaactggaagatggagaaaaataaattccagcgggaagtattaatca 731

                                                                       
Query: 238 aaacattaagagaataaatagatttgtttgtaagaaaaaagttatatacagacctcattt 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 aaacattaagagaataaatagatttgtttgtaagaaaaaagttatatacagacctcattt 671

                                                                       
Query: 298 ctgggccttactgctcgtatcctaagggcctcccatatcaatagtagccttccactgctg 357
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 670 ctgggccttactgctcgtatcctaagggcctcccatatcagtagtagccttccactgctg 611

                                                                       
Query: 358 cagcaagccttctaatagaaaaggttttcttaccccccacccccattccctccgtatgct 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 cagcaagccttctaatagaaaaggttttcttaccccccacccccattccctccgtatgct 551

                                                                       
Query: 418 tgtcatgtcctccttctcagactggaaacctaccctgctgaacatccccttttccttaca 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tgtcatgtcctccttctcagactggaaacctaccctgctgaacatccccttttccttaca 491

                                                                       
Query: 478 agatctgagactgacctaaacagcacacatattgatgtttgcagggttttattcagttct 537
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 490 agatctgagactgacctaaacagtacacatattgatgtttgcagggttttattcagttct 431

                                                                       
Query: 538 ttgatttaacctagatgaatataatgttattcatgggaattgaatggattttagataacc 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ttgatttaacctagatgaatataatgttattcatgggaattgaatggattttagataacc 371

                                                                       
Query: 598 tccttaaaacacctactatgatcttttataagggagatcaaggggccattaaagaaatgg 657
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tccttaaaacacctactatgatcttttataagggagatcaaggggccattaaagaaatgg 311

                                                                       
Query: 658 acaaggaaatcaagagggaaattatactcctgtggccatactattgtaagttaacctgca 717
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 acaaggaaatcaagagggaaattatactcctgtggccatactattgtaagttaacctgca 251

                                                         
Query: 718 tctaagtcctgaggacaaaaggaaaatggcttttgcctgttgtagc 763
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tctaagtcctgaggacaaaaggaaaatggcttttgcctgttgtagc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 763
Length of database: 1165
Length adjustment: 10
Effective length of query: 753
Effective length of database: 1155
Effective search space:   869715
Effective search space used:   869715
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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