BAC Information

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BAC

Clone NameMSMg01-049I14
ChromosomeX (Build37)
Map Location 72,339,758 - 72,340,173
singlet/doubletsinglet
Overlap genenone
Upstream geneOpn1mw, LOC627455, Gm1538, LOC628388, Tktl1, Flna, Emd, LOC100041344, Rpl10, Snora70, Dnase1l1, Taz, B230340J04Rik, Atp6ap1, Gdi1, D0HXS9928E, Plxna3, Lage3, Ubl4, Slc10a3, 1810037C20Rik, G6pdx, Ikbkg, EG628456, LOC628465, LOC100041484, LOC674920, EG245472, Olfr1326-ps1, Olfr1325, EG434797, LOC385383, EG667379, LOC667382, LOC546321, LOC667387, EG628518, Olfr1327-ps1, LOC628637, LOC667413, LOC100041594, LOC627775, EG546325, LOC100041017, EG628573, LOC100041642, LOC667437, EG667446, LOC669291, Gab3
Downstream geneDkc1, Mpp1, EG547412, 4930428E23Rik, EG667190, F8, LOC572559, LOC667218, Fundc2, Mtcp1, Brcc3, LOC667496, Vbp1, Rab39b, EG635243, Pls3, LOC635275, EG635295, LOC667537
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049I14.T7 (MSMg01no049_i14.b1)MSMg01-049I14.TJ (MSMg01no049_i14.g1)
ACCAG278953AG278954
length1,2681,269
length of high quality
(start - end)
418 (78 - 495)532 (83 - 614)
definitionCHROMAT_FILE: MSMg01no049_i14.b1 PHD_FILE: MSMg01no049_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:39 2005CHROMAT_FILE: MSMg01no049_i14.g1 PHD_FILE: MSMg01no049_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATCATTCGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTC
ATTTTGCTAATAGTGGTCCCTGTTAAGAATTGACTATTAACAGATAAGAC
CCTTAGAATTCCATGTTATTTTATAATGCTCCAGTGATAATTAATAGGGT
GAGTAAATCTGAAGTACTCATTTGCCATTTGTCCAGTGCCTTCATCTTTG
TCCTGTATCTCTATGCTCAAATCTTTTTGGAGAGATTTTGCTTTCGGAGA
GTTCCAGAACCCGTGGATTTTTCTTCACTCTTACTTCTCTAACCATCATT
ATAATGTCTCTATTTCTCCAGTAGCTTCCTGAAGTCCCAACTTTTTCTAC
TTTCCCTAGATTGTCTTAATAAGCAGCCTGAAAGTATCATTAAACTTAGG
TCCTGTTTATGCTTAAAATACTTTTTAAGGGTTGATGATAAGGTTCAACA
GTGAAGTGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGACTG
AGTGTTGTATTATTTCAATAATTTTCAACATTACACTCTTTTAAATATTA
TAATTTTTCTTCTGATCTTATATCTAATTATTATATTATATTTTTTTTAT
TTTTATTTATTTTTATACTAAATTTTTTTCCTTTCAATTATTCTCTTATT
TATATAACTATATATTAATTATTTTTTAATTTATATTATTTATTTAATAA
ATAAAATATTATTTTCTTCTTTTTTCCTTATTTACATTAAACTACTTTAT
CTTTTTTTATATTCTATTAATCATTTCTTATTTACTTTATTTCTTTTTTT
ATTCTCATTATCTTATCTCTTTATTCTTTTACTACATTTTCATATATATT
TTATTTATTTTTATATTTCCAAATATCTTTATTATCATTTTTTTACACTA
TTTATCTTATCCTTCATTTTTCTCTTATATTATTATTATATTTCTAAAAT
TTCTAACTACTTTTTATTACATATACTTTTTTATTCTTTTTTATTATTAT
ATTTTCTAATATATTCTTTATATAACTTACTTTTAATTCTATTATTTTCT
AATTCTAATTTTAACTATCCTATCTCTATTACATTATTAATTACCTTCTT
AATACATCTACTTTTCTTTTTATTAACTATCTTTTTTAATTATTCTATAT
TTATTATTCATTAATTTTTTCTTTATATTATTATTCTNACTTTCTTAATC
TTTTATATTTATATATCTTAANCTAAACTTCATTAACTTATACTATATTC
TATCATTTCAACTTATTA
CTTTTTAGATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCCTTAAAATTGTATTAGTAATTATTAAGCTC
TTTTATAATACCACTGCTATTAAGTCTTTCTTGGTGTCAAAACTGCAATG
AGAACTCTGCAAGTCTTCAAGTGACAGCAATTAATTACTTCTGAGATAGA
AAGCAGACATTTACAACTTAGAACACATTCCAAGAGGTTGCAAAACAATC
AACCAAAGGTCATAAAAAGGGAACTAATGATTTATTATAGGTGCAAGGAC
AGAAGAAATAATATTGATTGAATTTTTCTATATAAAATTTCAATGATAAC
TTAGTTATGGTCTTTAACTCTCTATGACACTGTAGATGTAGTGACAGATA
ATGATTGTTTAGTCAGATAATTACTCTTAATGACTATTCATGTAAAGATT
CTCTCTGGTCATGTGTGTCCTTTTGGTTCAGGGTTACTTCACACATGATG
ATATTTTCTAGTTCCATCCATTTGCCTGCAACATTCATGATGTTCTTGTT
TTTAATAGTTGAATATTATTCCATGCTGCAAATGAACCACATTTTCTGTA
TCCATTCTTCACTTGAGGGAACATCTGGGTTGTTTCCTGGTTCTGGATAT
TATAAATAAGGCTGCTATGAACATAGTGTAGCGTTGGACCCCAAGGCCCC
AAGTATACAAAACGTGACCTCTGGAAACACAGCTTGATCACTGATCGCTT
GTATGAAAACTGGTTTTTATTCCAACTCGTGTGTTTTTTACTCACACCTC
TCTAGGCAAGTCTATCCAAATTGTCAAAATTACTGTCAAACATTTTATAC
TCTTTTGAAAGGTGGTAGTTTTCATACAGATATCACTTATTGGCTAAACA
TACCATAAACAATATATAATTTTTTAAACATTATTCTATATTATTAATGT
ATTTACCACTCTAATTTTTATTTAAATTAGCTTAACATATACATCTAATT
TTTATTAACTCTTGTTTTAATATTATACAGTTTTTATTTCTAAATATTTA
ATATTATCATTCTTCTCAATATTTATACACATGTCTTCTACCTCTTAGAT
TTACACTTTTATTATAATAAATAATATTTTTCATTTATTTATTATCTTCA
TTATTTTTTCTATTCTATTNAACTTATTTTTCACCTTTATTATATAATGT
TATTATCTCTACAATAATCTTTAAGTTCATTAATTCTATTCCTACACTCA
NTACTTCGTTATTATATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_i14.b1 MSMg01no049_i14.b1 CHROMAT_FILE:
MSMg01no049_i14.b1 PHD_FILE: MSMg01no049_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:39 2005
         (418 letters)



>mm_chrX_72339594_72340411
          Length = 818

 Score =  789 bits (408), Expect = 0.0
 Identities = 414/416 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattgactattaacagataagacccttagaattccatgttattttataatgctccagtga 60
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 580 aattgactattaacagataagacccttagaattaaatgttattttataatgctccagtga 521

                                                                       
Query: 61  taattaatagggtgagtaaatctgaagtactcatttgccatttgtccagtgccttcatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 taattaatagggtgagtaaatctgaagtactcatttgccatttgtccagtgccttcatct 461

                                                                       
Query: 121 ttgtcctgtatctctatgctcaaatctttttggagagattttgctttcggagagttccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ttgtcctgtatctctatgctcaaatctttttggagagattttgctttcggagagttccag 401

                                                                       
Query: 181 aacccgtggatttttcttcactcttacttctctaaccatcattataatgtctctatttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 aacccgtggatttttcttcactcttacttctctaaccatcattataatgtctctatttct 341

                                                                       
Query: 241 ccagtagcttcctgaagtcccaactttttctactttccctagattgtcttaataagcagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ccagtagcttcctgaagtcccaactttttctactttccctagattgtcttaataagcagc 281

                                                                       
Query: 301 ctgaaagtatcattaaacttaggtcctgtttatgcttaaaatactttttaagggttgatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ctgaaagtatcattaaacttaggtcctgtttatgcttaaaatactttttaagggttgatg 221

                                                                   
Query: 361 ataaggttcaacagtgaagtgtgagtgagtgagtgagtgagtgagtgagtgagtga 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 ataaggttcaacagtgaagtgtgagtgagtgagtgagtgagtgagtgagtgagtga 165


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)