BAC Information

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BAC

Clone NameMSMg01-050E10
ChromosomeX (Build37)
Map Location 66,652,398 - 66,652,948
singlet/doubletsinglet
Overlap geneAff2
Upstream geneLOC627888, LOC434788, Fmr1, Fmr1nb, LOC100040244, EG627927, LOC666882, LOC671950, LOC100040255
Downstream geneEG666577, 1700020N15Rik, Ids, 1110012L19Rik, 4930567H17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050E10.T7 (MSMg01no050_e10.b1)MSMg01-050E10.TJ (MSMg01no050_e10.g1)
ACCAG279407AG279408
length1,2451,268
length of high quality
(start - end)
556 (37 - 592)274 (122 - 395)
definitionCHROMAT_FILE: MSMg01no050_e10.b1 PHD_FILE: MSMg01no050_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:48:21 2005CHROMAT_FILE: MSMg01no050_e10.g1 PHD_FILE: MSMg01no050_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:48:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTC
CTATATCTGTCTTCCCTTATCTCTCTTTTTCCCACTCAAACTTCTCTAAA
ATTGACCCTAGACTCTACCTCCATAGGCCACATTTTGGACACAGGCACTT
TCAGGTTATTTCCTTTCTCCCTTGCTCCCTCCTCCCCCATAGTTTCAAAG
ATTGCTTTTCACTTTGCATTAATTAAGAGCGAATATGATAATGTAACTTT
GAAAGTTATACTATTGTAGTATTTCTATGTCCCTTGTTTAAAAAGACATG
ATCTAATTTGTTTGGTATAAGGCATCATTTTTTTTCTATTTTGCTAGCCT
TAAATACCAACTTGTTTTAATTACAAATAACTGTAAGGCATCTGCAGAAA
ATACATGTTCTTTCCTTAATCTGGGGTCACTCAAGAGAATTGCCAAGGGT
TTTCTATATTACATTTGTTAATACAGAGAAATGTTAAATATAAACAATAT
TTCAAGATGAGACTGAAAAATGCAATACCTAAACCCTCTCCAGGTCCACC
TGCTTCATATCCACATTGCCAGAGGGGGGGATAAGAGAGGCATGACACCC
ACACAACACCTTCTGCAGCCTTAACACTAAAGGCACACATCGTTATCTTG
GAATGACCTGTGTGCCAAGGCAGTAAAGATCCACCGGATCAGAAGGAACA
AAAACCAGTTAAAGATTCACTTTCCCTTGCCTTCATTTTCTCCGAACCTC
AATATGGAGTTCCCTCAAAAGTTCATTATAATGTAGTAAGTAAAATTATA
GGGAAAAAAACCACCACCGGCGTACCTGTCAGGTGCTTGATTTTCCACTT
CCCAGAACAGAGTATTTCTTTACTATCTTCTCCCATAAGCCCAACCTCCT
CCATTGAACTCACATCAATTTTCTGGTGAATAAATGTAAATTTTTTTTAT
TAATCTTTGCTTCTTCCATTTTAATCCCTCGTCTTTTGGGGAAACCCATA
ATGTTATCTCATTTGGCTTTTGGTATTTTTAATGCATTCTTTCCTAGCTA
TTCTCCCCCGATTTATTTATAATGTTTTCTTCCTTTTATATTACTATACT
TTTTCCCTATTATCATATTTTTTCTATTTCTATAAAATATAATCATTATA
TGTTGTATCTATCAATAATTTGCTTTATAAATAACCATCCTCTTTATATA
ATAATCTTATATTCTTATTNGTAACTTACCTTTCTTTATACACCT
TTTTAAACATGGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCCCTTAAATTCCCTGTGAGCCCCATTTTTAAAT
GGGGTTATCCTTTTATCTGGAGACCAACTTCTTGAATTTAGGATAGGTAA
AAATCCTTTCCCAATCTGTTGCTGGCCTTTTTGTCTTATGGACAGTGTCT
TTTGACTTACAGAAGCTTTGCAGTTTAGTGGGGTCCCATTTGTTGATTCT
CGATCTTATAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTG
TGCCCATATCTTCAAGGTCTTTCCTCACTTTCTCTTCTATAAGATTCAGT
GTCTCTAGTGTTTATGTGGAGTTCCTTAATCCACTTAGATTTGACCTTAT
TTTTTTATGATAGGAATGAATCAATTCATATTCTTCTACATGATAACCAC
CAGTTGTACCAGCAAGAAAATGCTGTCTTCTTTCCCCTGGATGGTTTTAC
CTCCCTTGTCAAAGATCAAGTGATCATAGGTGTGTGCGTTCATTTCTGCG
TCTTCAGTTCTACTCCATTGGTCTACTTGTCTGTAGCTATACCTGTAACA
TGCAGTTTTTATCACAATTGCTCTGTAGTACAGATTTATGTCAGGCACGT
TCTTTCCACCAGAGCTTCTCTCATCCTTCATAAGAGTTTTTTGCCATCCT
AGGTTTTTTACTTTTTCCAGATGAATTTGCAGATTGTTCTCTTTCCTTTC
CGCTGAAAAATTGACTAGGAAATCTCGCTGGTTTTTTTCCTTTGTAACCC
GCTTCTATGCCATATTTCCAATTAATGTCTTTTTTTTCTGGTTCTACTCC
TTTCCTTACTCTTGATCTCTTGTTTCCATTCTTTTCTTTTTTCTTTATAT
TTTACTTTTCTTTTCTTTCCTTTATTTATTCTCTTACCATCTTTCCTATC
TTTTTATTTTTTTACTTTTCTTCATCTTATTATTAATCCTTTAACTTCAT
TTTCTTTTATTAATTTTTTCTCCTTTTCTTTTATCTCTTATTTTATCTCA
TTATTTTCTTAATGTTTTTNTATTTATTATCCTANTGATATGTTTATTTA
TATTCATACTACTCATCACTCTTTTTTATTTCTTCCCTAACTCTACCTCT
TTCCCCTTCTCACACTCTTCATTATTATCTACCTATTCTTCTATTATATC
ATATCATTCGCTCATATTCCTATATTTTTGTTNATATTTTATTATATATA
GTTATTATATATATTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_e10.b1 MSMg01no050_e10.b1 CHROMAT_FILE:
MSMg01no050_e10.b1 PHD_FILE: MSMg01no050_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:21 2005
         (556 letters)



>mm_chrX_66652194_66653148
          Length = 955

 Score =  967 bits (500), Expect = 0.0
 Identities = 540/556 (97%), Gaps = 9/556 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtcctatatctgtctt-ccctta-tctctctttttcccactcaaacttctcta 62
           ||||||||||||||||||||||| |||  | |||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtcctatatctgtctttccc--actctctctttttcccactcaaacttctcta 262

                                                                       
Query: 63  aaattgaccc--tagactctacctccataggccacattttggacacaggcactttcaggt 120
           |||||||     ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaattga---agtagactctacctccataggccacattttggacacaggcactttcaggt 319

                                                                       
Query: 121 tatttcctttctcccttgctccctcctcccccatagtttcaaagattgcttttcactttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tatttcctttctcccttgctccctcctcccccatagtttcaaagattgcttttcactttg 379

                                                                       
Query: 181 cattaattaagagcgaatatgataatgtaactttgaaagttatactattgtagtatttct 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 380 cattaattaagagcgaatatgataatgtaactttgaaagttacactattgtagtatttct 439

                                                                       
Query: 241 atgtcccttgtttaaaaagacatgatctaatttgtttggtataaggcatcattttttttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atgtcccttgtttaaaaagacatgatctaatttgtttggtataaggcatcattttttttc 499

                                                                       
Query: 301 tattttgctagccttaaataccaacttgttttaattacaaataactgtaaggcatctgca 360
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 500 tattttgctagccttaaataccaacttgttttaattagaaataactgtaaggcatctgca 559

                                                                       
Query: 361 gaaaatacatgttctttccttaatctggggtcactcaagagaattgccaagggttttcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 560 gaaaatacatgttctttccttaatctggggtcactcaagagaattgcaaagggttttcta 619

                                                                       
Query: 421 tattacatttgttaatacagagaaatgttaaatataaacaatatttcaagatgagactga 480
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 620 tattacatttgttaataaagagaaatgttaaatataaacaatatttcaagatgagagtga 679

                                                                       
Query: 481 aaaatgcaatacctaaaccctctccaggtccacctgcttcatatccacattgccagaggg 540
           |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 680 aaaatgaaatacctaaaccctctccaggtccagctgcttcatatccacattgccagaggg 739

                           
Query: 541 ggggataagagaggca 556
           ||||||||||||||||
Sbjct: 740 ggggataagagaggca 755


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 955
Length adjustment: 10
Effective length of query: 546
Effective length of database: 945
Effective search space:   515970
Effective search space used:   515970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)