BAC Information

Click to search

BAC

Clone NameMSMg01-050F01
ChromosomeX (Build37)
Map Location 4,669,025 - 4,669,828
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042168, LOC627187, LOC100042185, OTTMUSG00000016407, OTTMUSG00000016437, OTTMUSG00000016420, LOC547057, EG546327, EG668965, LOC546185, LOC100043933, LOC670673, LOC100042254, LOC100043934, LOC100042267, LOC100042275
Downstream geneLOC668967, LOC434724, LOC100043935, LOC668968, LOC546182, Mycs, LOC668969, LOC668970, OTTMUSG00000016453, LOC627412, LOC436185, LOC668971, LOC100043936, LOC668972, Nudt11, LOC208428, AU022751
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050F01.T7 (MSMg01no050_f01.b1)MSMg01-050F01.TJ (MSMg01no050_f01.g1)
ACCAG279432AG279433
length1,1451,155
length of high quality
(start - end)		802 (52 - 853)701 (81 - 781)
definitionCHROMAT_FILE: MSMg01no050_f01.b1 PHD_FILE: MSMg01no050_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:48:27 2005CHROMAT_FILE: MSMg01no050_f01.g1 PHD_FILE: MSMg01no050_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:48:27 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NGATACCNNNNNNAGACACTGGGCGCTNXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCATTTTAGTCCAGGAAACAATATTCTTAAATGCTTATTA
GAAAAAGTTCTGTCCCAAGGAGATTTTTTTATCCATGCAAAGTCCCTAAA
ATGAATTTTTAGAATTAGAAATCATCTTTAATTAAACATGGTATGGATAA
AGCCATCATGCAGCAATTCATTAACCTGATTAATAGCTTCAAGAATAGGA
GAAGGAATAAAAAAATGGACACAATACAACATCTAAATTAACAAAATGTG
ATATCTGTGTATTGGCTTCTAGGTTGCTAATTTTTCCACAGCAGACTGAT
GCTCATTACCCATTAGTTTGTCAGTAAGAAAGCCAAATATTTACATATCC
TATTGTTTTAGATATATCCTCAAGTAAACAAACATTTTTACATTTAGAGT
CTGCGTGCTTTGAAACTCCATCAAATACCACCCAAAGTCTGCTAGCTGTA
GATAAGCTTCCGGACTGTTCAAACCCTCTGTGCTGTTGGTGCTCTTTACA
GCTCTCAAACCCAGACTCCACACTGGGCGGCTGGGCTGCCATCACTCACA
TATCCATCCTCTTCAATTGCATCCTTCCAGAGATTTCCTCTTCTGAGTGA
TGATGATACCCCATTCTCTAAGTAAGTCATATTGTAAGTCCACAAGCAAA
CTGATATTCTGAATATTCTACTATATGTGCTATGATGGAAATTTATCACA
AGCAGTAAAACCACGTTACAAGTCTCTGTGTTTTTATCTCTTCAAATCTC
AGGGGCCTCTCCTTTGACCTGATTCAAGAGATGTTCTCCTTTATGACAAC
TGTGACCCTAGAAAAATGATTGTGACTTGNACACAATTTCATACTTTCAA
GTCCACGTGGTGAGAATCAGTGTCTACAGTGAAAAGGAAATCAGAAGGCA
TTGTTGTATAAGAGTAGCAATCTAATGCTGAAGAAGTGAAACATGCTGTG
TTATATAGGAGCTGGGATAAAAACTGTTAGAGCCAAAAATGGCAGGGCCC
TTAAGTTTTCATGAATACTTTCCCCTCCCCACAAATACGGTTTGGAATGG
GTTGGTTCCCCCCAACTCCAAAAACTTTGAAAGGGTTTACCCCCG

NNGGTGTATTNNNNAAAGATGGGTAGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGCTAACCCTAGTGTCCA
AAGCACATGACAACAGTAAAGATCCTATCTTACCCCTCCCACCATATGAT
TAATGTCATTAATAAATTTTCTGCTGTCTCAAGCAAATTCATTGTAGGGT
AAATACCTTAACATTCAGCTGGATGGTGGTGGCTCATGCCTTTAATCCCA
GAACTCAGGAGGCAGATCTAGGCATATCTCTGAGTTTGAGGTCAGCCTGG
TCTATATAGTATGTCTCAGGACAGCCAGGGCTACAGGGAGAGATCCTGTC
TTGGAAAACAAATAAAATAATACAAATATAAATATAAACAAAACAATGCA
ACATTCTTAACTGGAAAGTATTTGGCTATAGATGCTGAATGAAAGCCTTT
TCTAAAGCTAAACTATATGCTGTCAGCAATTGGTAATTTATCTCCACAAT
ACAATAATAAGAAATACTGAAACTATGTGTACTTCCGTCTGATAACACAT
AAGTCATTAATATACCATACAGAATCAAAAATAATTGTCAGGGTATTCCT
TCTAAATAAAATAATAATAATAAAAATAATTCCTTCTAAAGGCTCGGAAT
AATTTGTCCTGTGTGTCCTTTGCTTCCACTTTTTTTTTTCTTCCACACAA
CCAAAGTACTTTTCACGAAGAAAATAATTATAAATTAGAGCCTTGGACCC
TTTGTTTAATGTCTTAAATACCCCTTGAGTAGGATGNCCTGTTTTGTGAA
ATACTTGTGATCATTCTATTAAGCATAGATGCCTAAAATCTCTAGCTACC
AAGCTCAATGAAGGCAAAGGCTACTGGAGACATGTGGGTCTTGTCTCTCA
TTTGNAGTGAGCCTCAACATGATGTTAGTCTATACCCCATTAAATTATAA
TTTCCCATCAGAGTGCATCCTACTTGTACTTAGAAATTGTTGCCCGAATT
TCTTGCCCACTGAGAAAAGCGCTTGAAAAAACCTAATTCTTTGAATTCTT
TCCCTTCCCATCCCTTTTTGGGTTGGCCCACCCAAAAAAAACGAAATCTT
CTGAAAAAGAAAAAACCCAATATTTTCTTCTAAGGCTTAATAAAACAATT
GCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_f01.b1 MSMg01no050_f01.b1 CHROMAT_FILE:
MSMg01no050_f01.b1 PHD_FILE: MSMg01no050_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:27 2005
         (802 letters)



>mm_chrX_4668827_4670028
          Length = 1202

 Score = 1379 bits (713), Expect = 0.0
 Identities = 781/807 (96%), Gaps = 12/807 (1%)
 Strand = Plus / Plus

                                                                        
Query: 5    gaattccattttagtccaggaaaca--atattcttaaatgcttattagaaaaagttctgt 62
            |||||||||||||||||||||||||  |||  ||||||||||||||||||||||||||||
Sbjct: 199  gaattccattttagtccaggaaacaggata--cttaaatgcttattagaaaaagttctgt 256

                                                                        
Query: 63   cccaaggagatttttttatccatgcaaagtccctaaaatgaatttttagaattagaaatc 122
            |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 257  cccaaggagaattttttatccatgcaacgtccctaaaatgaatttttagaattagaaatc 316

                                                                        
Query: 123  atctttaattaaacatggtatggataaagccatcatgcagcaattcattaacctgatta- 181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 317  atctttaattaaacatggtatggataaagccatcatgcagcaattcattaacctgatttt 376

                                                                        
Query: 182  ---atagcttcaagaataggagaaggaataaaaaaatggacacaatacaacatctaaatt 238
               |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 377  ttcatagcttcaagaataggagaaggaataaaataatggacacaatacaacatctaaatt 436

                                                                        
Query: 239  aacaaaatgtgatatctgtgtattggcttctaggttgctaatttttccacagcagactga 298
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 437  aacaaaatgtgatatctgtgcattggcttctaggttgctaatttttccacagcagactga 496

                                                                        
Query: 299  tgctcattacccattagtttgtcagtaagaaagccaaatatttacatatcctattgtttt 358
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497  tgctcattacccattagtttgtcagtaagaaagccaaatatttacatatcctattgtttt 556

                                                                        
Query: 359  agatatatcctcaagtaaacaaacatttttacatttagagtctgcgtgctttgaaactcc 418
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557  agatatagcctcaagtaaacaaacatttttacatttagagtctgcgtgctttgaaactcc 616

                                                                        
Query: 419  atcaaataccacccaaagtctgctagctgtagataagcttccggactgttcaaaccctct 478
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 617  atcaaataccacccaaagtctgctagctgtagataagcttccggactgtacaaaccctct 676

                                                                        
Query: 479  gtgctgttggtgctctttacagctctcaaacccag-act-ccacactgggcggctg-ggc 535
            ||||||||||||||||||||||||||||||||||| | | || ||||||||||||| |||
Sbjct: 677  gtgctgttggtgctctttacagctctcaaacccaggatttcc-cactgggcggctgtggc 735

                                                                        
Query: 536  tgccatcactcacatatccatcctcttcaattgcatccttccagagatttcctcttctga 595
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 736  tgccatcactcacatatccatcctcttcaactgcatccttccagagatttcctcttctga 795

                                                                        
Query: 596  gtgatgatgataccccattctctaagtaagtcatattgtaagtccacaagcaaactgata 655
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796  gtgatgatgataccccattctctaagtaagtcatattgtaagtccacaagcaaactgata 855

                                                                        
Query: 656  ttctgaatattctactatatgtgctatgatggaaatttatcacaagcagtaaaaccacgt 715
            |||| |||||||| ||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 856  ttctaaatattctgctatatgtgctatgatggaaatttatcacaagcagtccaaccacgt 915

                                                                        
Query: 716  tacaagtctctgtgtttttatctcttcaaatctcaggggcctctcctttgacctgattca 775
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 916  tacaagtctctgtgtttttatctcttaaaatctcaggggcctctcctttgacctgattca 975

                                       
Query: 776  agagatgttctcctttatgacaactgt 802
            |||||||||||||||||||||||||||
Sbjct: 976  agagatgttctcctttatgacaactgt 1002


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 802
Length of database: 1202
Length adjustment: 10
Effective length of query: 792
Effective length of database: 1192
Effective search space:   944064
Effective search space used:   944064
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


| Home | SequenceCutter | Blast | Download |