BAC Information

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BAC

Clone NameMSMg01-050N04
ChromosomeX (Build37)
Map Location 164,072,761 - 164,073,443
singlet/doubletsinglet
Overlap geneFrmpd4
Upstream geneLOC641660, LOC667791, EG667794, LOC100040850, LOC627268, Tmsb4x, Tlr8, Tlr7, Prps2, EG627311
Downstream geneEG667822, EG637566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050N04.T7 (MSMg01no050_n04.b1)MSMg01-050N04.TJ (MSMg01no050_n04.g1)
ACCAG279781AG279782
length1,2071,240
length of high quality
(start - end)
675 (78 - 752)591 (67 - 657)
definitionCHROMAT_FILE: MSMg01no050_n04.b1 PHD_FILE: MSMg01no050_n04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:39 2005CHROMAT_FILE: MSMg01no050_n04.g1 PHD_FILE: MSMg01no050_n04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAACACTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCTTCAGGCTATATTTTCTTTATACATGCATCCATTTCTTTACCCAGAGA
ACTCCATTTGTTCCTGCTCTTCTTCTCCTCCAGTCTTTAACATAACAGTG
CTGGGAAAAGAAACTAGCCTTGATCATATCTTTCAGGTTTCCTACTGCTC
AGGTACATTTCTAGTCCTCAGGAAAGTTCGAAGGGGCATCGATTTACTAT
TTTCTGCCTCTATGAATACAGTGCCATTCAGTTGCTGCCCTCAAAGAAAT
TCCATACCAGTAGGAAAGCCAGAGGTATCAGTATCCAAGAATAATAGTTT
GAAGTCAATATGATTCATGGGGACAAGGGAAACAAATGGGGGTCAGGAAA
TACCAGGAGATGCACATTGGAAACTATTGGGTAGAGGAGGAGAGAATGGT
TCAAGAAAATAGCAAAAACAGTCATAAAGAGATAATAAAAGCGGTGTTTA
GAAAACTGTCCCTTGCAGGGTACCGGCAAGGTTACAGGCTAGGAGACAAA
ATAGTAGCTATGATTATGTCAGAATGCTGTCTGCTCTCTTCAGCATATTT
TTGTGTAAGCAGAACCCAGAATCACTAGACAACCCAGAAACTAAAAATTA
CCACGTCACTGGAATCCAGTGCAAAAGAACAAGGAAAATGATGATGATGG
TAAAACCAGAATGTTTTTCCACATTATATGAGATAAAGGTGAAGTTTTCA
GAAAGTAGAGCTTTACTATTAACTCAAAAGCACATATTATGAATTGTTTA
CAATCAGAGTTCTTTTTAAGAATAAAAATTCAAGGATATAGACTCCATAA
AGAACCTAGGCCCACACATTTTTTTTCCACCTCATGCTTCTGGCTTTTAA
AAAATGAGATGCCGTAAATCAAGGCACCTATTAGGGCTTAATATAAAGGT
AACATTTAAAAATAAGGTCCCACTAACTTCATGAACCAAATTTATCCTCC
CCCGGGTTTCAATTCTATTTTGCCCGCCTTCCCTTACTGGAACACTAATT
TCCCCCAATATAAAAATTTCCATCCCTCATCCTAATGTCCATCCCCCCCT
GAAACAAATTTTTGCCTCTCTCCTTTTCCGACGCAATGAATTTTCGGGAC
CCCCTGACAAAAATGTCTTCTATTGTCCCGTTCCCTCTTGTCGAATATCC
TAAAATA
TTTTCCCCATGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCTTTTTCTTTATGTCCTCTACCATCATCATGAG
ATATGCTTTCTTATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTG
GATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGG
CTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAATCTCT
GGAGTTAGTTGTTATAGTTGTCTTTGTTAAAAGATTGTTCCTCTGTTGAT
TTTGTTACCCTCTATCAGCAGGCGTGGGAGACAAGCTCTCTTCTCTGAGT
TTCAGTGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCTCAGGGAAG
GTGTACAGTCATCTGGTGTTTGGACCTCCTCCTGGCTGAAGGTGCAGGCC
CAAAACAGGATCTTTCCCACAAGCTGTGTTGCTTTGGCCAGGAAGGTGGC
CAGTTGTCTGGAGTCGAAGATGTCGCAGCCTCAGAAGCTCTGTGGCTCTT
GCCGGGAAGGTGGCTGGTTGTCTGGAGCTGAGGATGGTGCCGCCCCAGAA
TCTCTGCGACTCTCTCGCCCGTCCCACAAACAGCTGGCACTGTATTCCAC
ACGGTCACTCGTGCACCCTGCCCTCCGCGGAGTCCCGGAGCCAAGATCCC
TCCCGCCGGTGCCTGTGCCACAAACCTCTCAGGTCCGGTAGACCCCCGTG
CTCTCACCAGGAAGGTGGCCGGCTGTCTGGAGCTGAAGCTGGCGCCCTCC
CAGAATTTCTGCGACTCTCTCGCCCCCTCCTAGAAACTGTTGTTCACTCT
GTATTCCCCCACGTTCACCCCGTGCAGCCTGCCCCTCACTGGTATTCCCG
GAATCCTAAAAAGGTTCTCCCCCCGGCTTCTTGTGTCTCTAACCCTTTTT
ATGTCTCTATAAACCCTCCGCTGTTCTCATCCACTAATGTTGCTTCCCCC
TTTCCTGGAACTCTAAACATGTCTTCCCCCCCTAAAAATACCCTTCCTAA
TTCTCCTTCCCTCGCTCCCAAAAAAATAGACTGTTCTCTTTCTTTTTTTT
CCCATACCTGTTCTACTCTCTGTGTCAACTGCGCTCCCTCTTCCTGCTTG
CTCCCTTTTATATCAATTAAAAGTCTCCTCCTTCTCTCGTGTCTCTGGTT
CTCTCACTACATCCTTCTTCTTGTTCTATTATTTCTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_n04.b1 MSMg01no050_n04.b1 CHROMAT_FILE:
MSMg01no050_n04.b1 PHD_FILE: MSMg01no050_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:39 2005
         (675 letters)



>mm_chrX_164072569_164073643
          Length = 1075

 Score = 1193 bits (617), Expect = 0.0
 Identities = 663/683 (97%), Gaps = 8/683 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcatccatttctttacccagagaactccatttgttcctgctcttcttctcctccagtctt 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 193 gcatccatttctttacccagagaactccatttgctcctgctcttcttctcctccagtctt 252

                                                                       
Query: 61  taacataacagtgctgggaaaagaaactagccttgatcatatctttcaggtttcctactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 taacataacagtgctgggaaaagaaactagccttgatcatatctttcaggtttcctactg 312

                                                                       
Query: 121 ctcaggtacatttctagtcctcaggaaagttcgaaggggcatcgatttactattttctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ctcaggtacatttctagtcctcaggaaagttcgaaggggcatcgatttactattttctgc 372

                                                                       
Query: 181 ctctatgaatacagtgccattcagttgctgccctcaaagaaattccataccagtaggaaa 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 373 ctctatgaatatagtgccattcagttgctgccctcaaagaaattccataccagtagggaa 432

                                                                       
Query: 241 gccagaggtatcagtatccaagaataatagtttgaagtcaatatgattcatggggacaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gccagaggtatcagtatccaagaataatagtttgaagtcaatatgattcatggggacaag 492

                                                                       
Query: 301 ggaaacaaatgggggtcaggaaataccaggagatgcacattggaaactattgggtagagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ggaaacaaatgggggtcaggaaataccaggagatgcacattggaaactattgggtagagg 552

                                                                       
Query: 361 aggagagaatggt--------tcaagaaaatagcaaaaacagtcataaagagataataaa 412
           |||||||||||||        |||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aggagagaatggtatcctgattcaagaaaatagcaaaaacagtcataaagagataataaa 612

                                                                       
Query: 413 agcggtgtttagaaaactgtcccttgcagggtaccggcaaggttacaggctaggagacaa 472
           |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 613 agcggtgtttagaaaactgtcccttgcagggtactggcaaggttagaggctaggagacaa 672

                                                                       
Query: 473 aatagtagctatgattatgtcagaatgctgtctgctctcttcagcatatttttgtgtaag 532
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 673 aatagtagctatgattatgtcagaatgctgtctgctatcttcagcatatttttgcgtaag 732

                                                                       
Query: 533 cagaacccagaatcactagacaacccagaaactaaaaattaccacgtcactggaatccag 592
           |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 733 cagaacacagaatcactagacaacccagaaactaaaaattaccacgtcactgggatccag 792

                                                                       
Query: 593 tgcaaaagaacaaggaaaatgatgatgatggtaaaaccagaatgtttttccacattatat 652
           || ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 793 tggaaaagaaaaaggaaaatgatgatgatgataaaaccagaatgtttttccacattatat 852

                                  
Query: 653 gagataaaggtgaagttttcaga 675
           |||||||||||||||||||||||
Sbjct: 853 gagataaaggtgaagttttcaga 875


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)