BAC Information

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BAC

Clone NameMSMg01-051A17
ChromosomeX (Build37)
Map Location 37,858,954 - 37,859,274
singlet/doubletsinglet
Overlap genenone
Upstream geneEG636756, EG636766, EG245391, LOC100039769
Downstream geneLOC385344, Gria3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051A17.T7 (MSMg01no051_a17.b1)MSMg01-051A17.TJ (MSMg01no051_a17.g1)
ACCAG279936AG279937
length1,2201,287
length of high quality
(start - end)
541 (87 - 627)325 (88 - 412)
definitionCHROMAT_FILE: MSMg01no051_a17.b1 PHD_FILE: MSMg01no051_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:10 2005CHROMAT_FILE: MSMg01no051_a17.g1 PHD_FILE: MSMg01no051_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCATTTTTTNNNNGTCATTGGGCGCTAAGACTCCTATGGGAGAGGATCC
GCGGAATTCTTTGTTCAGTTCTGAGCCCCTTTTTTAATGGGGTTATTTGA
TTTTCTGAAGTCCACCTTCTTGAGTTCTTTGTCTACGTTGGATATTAGTC
CCCTATCTGATTTAGGATAGGTAAAGATCGTTTCCCAATCTGTTGGTGGT
CTTTTAGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTT
CATTAGGTCCCATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTG
TTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCC
ACTTTCTCTTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTT
GATCCTCTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTC
GCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTATTGAAA
ATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCTCTTGTCGAAGACCAA
GTGACCATAGGTGTGTGGGTTCATTTCTGGGCCTTCCATTCTATTCCATT
GATCTACTGGTCTGTTTCTATACCAGTCACCATGCAGTTCTTTATCCTAT
TGCTCTGTATTAAAGCTTTAGGTCAGGCATGGTGACTCCTCCAGATGCTC
TTTTATCCTTGACCATAGTTTTTGCTTTTCCTAGGTTCCTTGTTATTCTC
TATGATTCTGTATATTGTTTCTTTTCTCTTTTTTATTTCTTTGTTTTTTT
TTTTTGTTGCATCATCGTCTTTGCTTCTTTTTCTTTGCTTTTTTTTTCAT
TTTTCTTTTTTTTTTTATGCTCTTCCTTTCTTATTTTTTTTCTTTTTATT
TTTTTTTTATTTTTTTTTTTCTTTTTTATTTCTTTTTTCCTCTTTTTTTT
TTTTATACTTTTTTTTCTATCTCTTCTCTTTTCTTCTTTTCTTTTTTTTT
TTTTCTCTTTTCCTTCCTCTCTTCCCTTCTTTTTGTCTCTTATTTTCTTT
TTTTTTTTTTTTTCTTTTTTTTTTCTTTTTTTTCTTTTTTTTTTTTTTTT
TCTTTTTTTTCTTCCTTTATCTTTTTTTTCTTTTTTTTTCTTCCTCTTTT
TTTTCTTTCTCCTCTTCTTTCCTTTTTTTTTTTCTTTTTCCTTTTTTTTT
CTTTTCCTCTTTTTTTTTTT
NNCCAATTTTTTTNNNATATCTTXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTTAACAGAGCACGTT
GGTTCATTAAGAGAAACTGACCCCTTTATTTAATATTAAATGGGCCATGT
AGTATGCATTTTCTCTTTGTATTTTGAGAAGAGTAGAATGCCAGCTTAAT
TTATTAATGAGGTAATTATTTTTATTGTTTGTTGTAATTTTCCTTTTATG
AAAACCAAGGATAAATCTGGAACGATAGATGCAAGCATCAGCAACAGAAT
ACAAGAGATGGAAGAGAAAATCTCAGGTGCAGAAAAACCCATAGAGAACA
TCAGCACAAGAATCAAGAAATGCAAAATGCAAAATGATCCTAACTAAAAA
CATCTAGGAAATCTTTTTTTAAATGAGAAGACCAAAACTACGGATAATAG
GAGTAGATGACAATGAATTTTTTCCCCCCCCAGGGCCAGCAAATATCTTC
AACAAATTATAGCAGAAAACTTCCCAAACCTAATGAAAGAGATGCCCCTG
CACATAAAAGAAGCCTACCCAATTCCCAACAGACCGCACTAGATCAGATA
TTCCTCCCCACACATAATAATCAGAACACCAAATGCACTATTCAAAGCTA
CAATATTTTAAGCAGTAAGGTAAAAAATTCTTGTATCTTATTATGGCAGG
CTCCATCTCCCTTACTCCACATCTCTCCCTCTGAGACTTATGATGCCCGT
TTTATCCTTGTACTCATGTTTTCCTCTCTCTTTTCCAAACCCTAATGTCT
CTTTTTTTTTTTTTATATCCTCGTCTCCCTTCTCTACTTACTCATTTCTG
TATTATCCTTATATTATTTCTTTGACCTATCCTTTATTCTTTCTGTTTTT
TTGTCTCTTTTTATCTCTCCTCTCTCCCTTTTTCTTTCCTTTTTCTTTTC
TTATTCTTTTTTTTATTATTTTTTCCTCTCTTCTTCTCTCTTTATATATA
CTCCTTTCTCTCTTTTCTCTTTCTTTCTTCTTTCTTTTTTATTCATCTTC
TTCTCTTCTCTTATTCTTTCCTCCTTTTCTCTTTTCTTTTTTTTCTCATC
CTCTTTTTTCTTTTTCTTCCTTTCTTTACTCCCTTCTTTCCTTTTCTGTT
CTTTATTCCTCCTTTTCATTGTTATTTTATTTCCTTCGTCTTCTTCTTAT
TTTTAATTGTCTTACTTCTTCCTTCTTTCTCTCTTTCCTTCCTTTACTCT
CCCTTCACCTCTCTTTTTCTCTTATATTTTGTCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_a17.g1 MSMg01no051_a17.g1 CHROMAT_FILE:
MSMg01no051_a17.g1 PHD_FILE: MSMg01no051_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:50:10 2005
         (325 letters)



>mm_chrX_37858751_37859474
          Length = 724

 Score =  545 bits (282), Expect = e-159
 Identities = 312/324 (96%), Gaps = 5/324 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   agagcacgttggttcattaagagaaactgacccc--tttatttaatattaaatgggccat 61
           |||| |||||||||||||||||||||||||   |  ||||||||||||||||||||  ||
Sbjct: 204 agagtacgttggttcattaagagaaactga---cattttatttaatattaaatgggagat 260

                                                                       
Query: 62  gtagtatgcattttctctttgtattttgagaagagtagaatgccagcttaatttattaat 121
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtagtatgcattttctcttcgtattttgagaagagtagaatgccagcttaatttattaat 320

                                                                       
Query: 122 gaggtaattatttttattgtttgttgtaattttccttttatgaaaaccaaggataaatct 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggtaattatttttattgtttgttgtaattttccttttatgaaaaccaaggataaatct 380

                                                                       
Query: 182 ggaacgatagatgcaagcatcagcaacagaatacaagagatggaagagaaaatctcaggt 241
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaatgatagatgcaagcatcagcaacagaatacaagagatggaagagaaaatctcaggt 440

                                                                       
Query: 242 gcagaaaaacccatagagaacatcagcacaagaatcaagaaatgcaaaatgcaaaatgat 301
           |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 gcagaaaaactcatagagaacatcagcacaacaatcaagaaatgcaaaatgcaaaatgat 500

                                   
Query: 302 cctaactaaaaacatctaggaaat 325
           ||||||||||||||||||||||||
Sbjct: 501 cctaactaaaaacatctaggaaat 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 724
Length adjustment: 9
Effective length of query: 316
Effective length of database: 715
Effective search space:   225940
Effective search space used:   225940
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)