BAC Information

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BAC

Clone NameMSMg01-051D16
ChromosomeX (Build37)
Map Location 124,975,814 - 124,976,270
singlet/doubletsinglet
Overlap genenone
Upstream gene4930412D23Rik, LOC385523, LOC100040516, Mdm4-ps, EG237030
Downstream geneLOC100040538, LOC100040550, LOC100040562
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051D16.T7 (MSMg01no051_d16.b1)MSMg01-051D16.TJ (MSMg01no051_d16.g1)
ACCAG280061AG280062
length1,311685
length of high quality
(start - end)
216 (80 - 295)460 (75 - 534)
definitionCHROMAT_FILE: MSMg01no051_d16.b1 PHD_FILE: MSMg01no051_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:37 2005CHROMAT_FILE: MSMg01no051_d16.g1 PHD_FILE: MSMg01no051_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCCCAGCTATTGGTGCTATAGACTACTATAGGGAGAGGATCCGCGGAAT
TCTGCAAATCCATTAAAACAGTTTATGGAATACAGAATCAAACACCAAAT
CATCTATACTTTTTTTAACTCTGATTCTTCCCCCTCATTCTTTTTTAAAA
AATTTTTATTAGATATTTTCTTCATTTACATTTCAAATGCTATCCTGAAA
GTCCCCTATACCCTCCCCCAACCCTGCTCCCCTATCCAATCACTCCCACT
TCTTGGCCCTGGCATTCCCTTGTACTGTTGCATATAAAGTTTGCAAGACC
ATGGGTCCTCTCCTCCCAATGATGGTCATTTAGTTCACCTTCTGCTACTT
ATGCAGTTAGAGACACGAGTTTTGGTTTTATTGATTAGTTCATATTGTTT
TTTTTTTTACAGTTTTGTACATCCTTTCATTTCCTTGTTAGTTTTCTCTA
TTTTTTTTTCCCCCCCCCCTGTCTTTCATCCCCTATAAAAAAAAGGGGAT
TTTTTTTTCGTTTCTTTTTTCTTTTTGTTTTATTTTCTTTTTATATCACT
ATATTCTTTTCTTATTCATCAAAATTTTGTTTTCTTGTGTCTTATATGTT
TGTTTTTTGTGTTTGATATATTTTACGTATTTTTTCCCTTTTTTTTTTAT
TTTTTTTTTTCTCTTATTATTATTTTTTTTATTTTTCTTTTTATTTATTT
TTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTATTATTTTT
TTATTTTTTTTTTCTTATTTTTATTATTTTTTAACTCTTTTATATTTTTT
TTTCTTTTTTTTTTTTCTTTTTTTTATTTATTTTCTTTTTATTTTTATTT
TTTTTTATTATTCTTCATTTATTTTTTTATATTATTCTTATTTTTTTTTT
TTCTTTAAAGTTTTATTTTTTATTATTACTTTCCTTTTATTATATTATAT
TTTTCTTATTCTTCTTCTTATTTTTTTTTCTTATTCATTATCTTTTTTTT
TTTTTCATTTATATATTTTTCTTTTTTAATTTTTTTTTATTTTTTTAATT
TCTATTTATTTTTTTATTTTATTATATTTTTTTTTTTTTTTTTTAATTCT
TTCATTTTTTTTTTTTTTTCTTCGTTATTATCTTATTATTTCATTGTATT
TTGTTTGTATTTTTATCTTTCTCTCTTTTCTTTTCTTTTACTCCCTTTAT
ATTATTCTTTATTTTTATTCTTATTTTATTTATTTTCCCCTTTTTTATTT
TTTATCTATTTGTATTTATTTTCTTTTATTTCTCTTGTATTTATGTTTTT
TAACTTTTCTT
CACTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTCTTAAAATGAGGTATATTAATAA
ATATAATTCCATTAAAATGGCCTTCATCTTGCGATGTCTCTCTTCATTTC
TGAAACTCATGCAATTGAAATAAAGGACAAACTTTCAAGTTTTGAGTAAT
CTTTTCAGGGGCAAGATACAATTCAACAAAACTGTGCAAAGCAACCCTGA
AAAATTTGGAGGTAGTACTAATCAACATTTATTAACTGACTAATTTTAAT
CATAAACTGGGTTTTGTGTTTTTCAGCATACTTTTATATTCACAATAAAA
ATCTCATTAAGGTTTAATACAATTGTTTATTTGACTAGAAAAAAATTTAT
AGAAAATCTACCACTACCCCATTACCATGACCTTATAAAAAGGACTTCAG
AAATTCAATCCTCTGTAGATTATTTAACAGGAAGAACAATAGGCATTTAA
TGCTTGGATTACTATCTGAATTTTATTTGTCTAGGGATTTTCAACATATG
TTTACCTATTCCTAATCTCCCACCTACAGAGAAGGGCCAATTTTTGATGA
TTTTTCAAATTCATGATCGCTATACCAATAATTCTTAGCTGTGACATGCC
TATAATGTATTGGGTACATAATATTATTTCCCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_d16.g1 MSMg01no051_d16.g1 CHROMAT_FILE:
MSMg01no051_d16.g1 PHD_FILE: MSMg01no051_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:50:37 2005
         (460 letters)



>mm_chrX_124975614_124976474
          Length = 861

 Score =  837 bits (433), Expect = 0.0
 Identities = 451/457 (98%), Gaps = 1/457 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcttaaaatgaggtatattaataaatataattccattaaaatggccttcatcttgcga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcttaaaatgaggtatattaataaatataattccattaaaatggccttcatcttgcga 260

                                                                       
Query: 61  tgtctctcttcatttctgaaactcatgcaattgaaataaaggacaaactttcaagttttg 120
           |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 261 tgtctctcttcatttctgaaactcatgctattgaaacaaaggacaaactttcaagttttg 320

                                                                       
Query: 121 agtaatcttttcaggggcaagatacaattcaacaaaactgtgcaaagcaaccctgaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtaatcttttcaggggcaagatacaattcaacaaaactgtgcaaagcaaccctgaaaaa 380

                                                                       
Query: 181 tttggaggtagtactaatcaacatttattaactgactaattttaatcataaactgggttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttggaggtagtactaatcaacatttattaactgactaattttaatcataaactgggttt 440

                                                                       
Query: 241 tgtgtttttcagcatacttttatattcacaataaaaatctcattaaggtttaatacaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgtttttcagcatacttttatattcacaataaaaatctcattaaggtttaatacaatt 500

                                                                       
Query: 301 gtttatttgactagaaaaaaa-tttatagaaaatctaccactaccccattaccatgacct 359
           || |||||||||||||||||| |||||||||||||||||||||  |||||||||||||||
Sbjct: 501 gtatatttgactagaaaaaaaatttatagaaaatctaccactattccattaccatgacct 560

                                                                       
Query: 360 tataaaaaggacttcagaaattcaatcctctgtagattatttaacaggaagaacaatagg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tataaaaaggacttcagaaattcaatcctctgtagattatttaacaggaagaacaatagg 620

                                                
Query: 420 catttaatgcttggattactatctgaattttatttgt 456
           |||||||||||||||||||||||||||||||||||||
Sbjct: 621 catttaatgcttggattactatctgaattttatttgt 657


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 861
Length adjustment: 10
Effective length of query: 450
Effective length of database: 851
Effective search space:   382950
Effective search space used:   382950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)