BAC Information

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BAC

Clone NameMSMg01-051J01
ChromosomeX (Build37)
Map Location 111,970,838 - 111,971,186
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC237016, EG664945, EG634881, LOC100039201, Klhl4, Gm1866, EG546361
Downstream geneEG237009, 4930524E20Rik, LOC237008, EG664969, EG546362, LOC100039255, LOC623913, LOC546363
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051J01.T7 (MSMg01no051_j01.b1)MSMg01-051J01.TJ (MSMg01no051_j01.g1)
ACCAG280286AG280287
length1,2681,277
length of high quality
(start - end)
367 (30 - 396)37 (67 - 103)
definitionCHROMAT_FILE: MSMg01no051_j01.b1 PHD_FILE: MSMg01no051_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:27 2005CHROMAT_FILE: MSMg01no051_j01.g1 PHD_FILE: MSMg01no051_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGGGGGGCTCTGGGCGCTATAGACTCCATAGGGAGAGGATCCGCGGAAT
TCTTTGTTTAGCTCTGTACCCTATTTTTAATAGGGTTATTTGGTTCTCTG
GAGTCTAACTTCTTGAATTCTTTGTATACATTGGATATTAGTCCTCTATT
GGCTGTAGGATTGGTAAAGTTACTTTGTCAATATCTAGATTCATAGAGGA
AGAGTCAGTGTCCCAGTATCAGTATCAGGAATAAAATTCAAGAGTTCCAG
ACATCTTCAATTCTGAACATTCCTATCTCGGTCATTGTACTTTGAATATA
ATCTATATTCTCTAAAAAAAAAAGTCATTAGGTGAATTTCAGGAGAATTT
CTGATAAGTACTGAATGAGTCTGGACAATGGCAAAAGGACAGTTGTTATT
TTGAGTATAACACAACACATGTATAATATTTTGGAACACAATTGTGTTTG
TTTTTGTACTCGCTTACATCACATCAAACATACTTCCTGACACACGGGCT
GTTTTTGTGATGACGCATTGTATTCTGGTCAATGATCATGGTACTTATAC
TTTATGTAGATGTATACTGTTGATTTCCTTCTCAGTTTAGATTCATTGTT
CTTTCCTCTCTCTTTTTGAGTTATATTTTCTCTCTGCTCGCTTTGTTTTT
TTTTTGCTTCTTGTTGATGTTTTTTATATATTTTTTTTCTTCTCCTTGTT
TTTATTTTTTTTTTATTTTTTCTTTTCTTTTTTTTTTTCTTCTTTTTTTC
TCTCTTCTCCTCTCTTTTTTTTTCTTTTTTTTCCTTATTATTTTTTTTTT
TATTTATTATTTTTTTTTTTTAATTTTTTTTTTTTTTTTTTATTTCTTTT
CTTTTTTTTTTTCTTTTTCTCTTTTCTTTTTTTTCTTTTTTTTTTTCCCT
TTCTTTTTTCCTTTCTTCTCCTTTTTTTTTCTTCTTTTTTTTCCTTTTTT
TTTCTTTTTTTCTTTATTTTTTCTTCTTTTTTTTTCTTTTTTTTTTCTCT
TTTTCGTATTTTTTTTTTTTTTTTTTTTGTTTGTTTTTATTTTTTCTTTT
TTTTTATCTCTTTCTTTTCCTTTTTCTTCTCCCTTTTTTATTTTTTTATA
TTTATTTTATTATTTTATTTTTTACTCCTTTTCTTTTCTCTTTTTTCTTC
TNTCTTTTCTCTTTTATTTTTTCCTTTTCTCTTATACACTCTCTCCTTTT
TTTCCCTTATTTCTTTTCTTTATGCTTTTCCTATTCTTTCTCTTTACTCT
TCTTCTCTTTCTTTCTCC
TTTAGGATGGAGGCGGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCAGTTTAGTTCTATACCCATTTTTTGATTGGGT
TGTTTGGATTTTCGTTNTACCCCCTTTAATTTTTATTATTATTACTTATT
AACTTAACAATTTCATATATATTTAACTACTTATTTTTCTATCTATTTTT
TTTTCCCTATAAATCCTCTTATTCTTCCCCTTTCTAATCATTTTATATTC
TCTATTTTATCTATACTTTTCTTATATATTTTATCTACTAACTCTTTATT
TACACACTCCTTTTTTTCTACTATTCCTTCTAATCTTTTTATTTATTCTT
TTCTTTTCACTTTCTATAATCAAAATTATTACCCACTCTCTTTTTTTTTT
CTATATCACACTATTTTCATATTTTTCTCTTTTTTAAATTTTCCCCTTTT
TATTTTAATCCTTCTTTTACCCTCATATTCCATTCTTCTTTAATTTATTT
TTTACTTCTTTTTTTATCATTTATTCTCTATATTCTTATTTATATCTCCT
CCTATCCCATTTTTATTCTAATTCTTTTTTTATAATAATAATAAATATCT
TCTTAATTAATTACACTTTTCTATTTCATCTTTCTTCACATATCTAATAT
CAACTATATATCTATCTATTTCTTATTATTATTCTAACTCTTACTTACTT
TCATTATTCATTTCTACACTCTTCTCTTACTTTCCTATTAAAAACTTTAC
TCATTTACTTACTATTCTTTTATCCTCTTTTACTATTTTTTACCTTATTA
TTTCCGATTTTTTCTTATTTATTATTTATATTATCTTTATTAATTTTTTA
CTTATTTTTTTATTTATTACTTTTATTTCCTTTATATTTAATTCTTTCTA
TATAATAATAACTTATATATTTATTATTCCTTTAATTATCTTACATCTTT
TATATCTTTCGACAATTATCTTACTCTTTATTTATATTATAATTTTTTCT
CATCTATATCTTATTAATCCTTTTTATTTATGCATTTCTTTTATTCTTCC
GCATCTGTGTGCTTTTACTCTTTTTCGATTCTCGGGGATTTGATTACTAA
ACTTCTTTTAAGGAAGTATTTTTTTCATTATTTTTTTTTATATCACATCT
TCTGATAATGCTTTCTGCCACCTAATTCTCTTACTAAGGGCATTAGTAGT
GATTGCACCCAACATTGAGTATTGTTTCATGTAGATTTTTTACACCCCAC
GGATGCTGTATGATAATGGATACATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_j01.b1 MSMg01no051_j01.b1 CHROMAT_FILE:
MSMg01no051_j01.b1 PHD_FILE: MSMg01no051_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:51:27 2005
         (367 letters)



>mm_chrX_111970621_111971387
          Length = 767

 Score =  644 bits (333), Expect = 0.0
 Identities = 345/349 (98%)
 Strand = Plus / Plus

                                                                       
Query: 18  gaattctttgtttagctctgtaccctatttttaatagggttatttggttctctggagtct 77
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 218 gaattctttgtttagctctgtaccccatttttaatagggttatttggttctctggagtct 277

                                                                       
Query: 78  aacttcttgaattctttgtatacattggatattagtcctctattggctgtaggattggta 137
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 278 aacttcttgaattctttgtatatattggatattagtcctctattggctgtaggattggta 337

                                                                       
Query: 138 aagttactttgtcaatatctagattcatagaggaagagtcagtgtcccagtatcagtatc 197
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 338 aagttactttgtcaatatctagattcgtagaggaagagtcagtgtcccagtatcagtatc 397

                                                                       
Query: 198 aggaataaaattcaagagttccagacatcttcaattctgaacattcctatctcggtcatt 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aggaataaaattcaagagttccagacatcttcaattctgaacattcctatctcggtcatt 457

                                                                       
Query: 258 gtactttgaatataatctatattctctaaaaaaaaaagtcattaggtgaatttcaggaga 317
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 458 gtactttgaatataatctatattctctaaaaaaaaaagtcaataggtgaatttcaggaga 517

                                                            
Query: 318 atttctgataagtactgaatgagtctggacaatggcaaaaggacagttg 366
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 atttctgataagtactgaatgagtctggacaatggcaaaaggacagttg 566


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)