BAC Information

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BAC

Clone NameMSMg01-051N04
ChromosomeX (Build37)
Map Location 126,507,199 - 126,536,977
singlet/doubletdoublet
Overlap geneDiap2
Upstream geneLOC100040550, LOC100040562, LOC100040570, LOC669120
Downstream geneLOC100040092, LOC665773
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051N04.T7 (MSMg01no051_n04.b1)MSMg01-051N04.TJ (MSMg01no051_n04.g1)
ACCAG280474AG280475
length1,229687
length of high quality
(start - end)		370 (42 - 411)454 (75 - 528)
definitionCHROMAT_FILE: MSMg01no051_n04.b1 PHD_FILE: MSMg01no051_n04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:03 2005CHROMAT_FILE: MSMg01no051_n04.g1 PHD_FILE: MSMg01no051_n04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,536,623 - 126,536,977)(126,507,199 - 126,507,651)
sequence
AATTTTTNNNNGGATCATTGGGCGCTATAGACTCCTAAGGGAGAGGATCC
GCGGAATTCAAATAATAAATTATTTATTTGAAGGGAAAGTGAAAACAAAA
ATAAATATTTAGGGTTGGGTAAATGCTTTTACTTTCCCTTTTTTAATGAA
GGGCCTACTAAATAGCTTACAAAAATAGAACTGCTTGAATAAGCAAGGAA
AAAGTTCAAAGTGAAAGACCCAAACTTTGTGAGGCTTTTCATGTTACTAA
CAGTTACAAATACATGAATGAGCAAAAGGGATGTTTCAATGTTTCTCTAT
GCTATACACTAAATCTGTAACTTTTGTATGAGTTTTAATGAGATCATAAA
CTTCAACTTTTTCACTTATTCAGTTTCATACTTTGTGAGATGATTTACAA
CTCATTCTTGAGCCAGTATGATCATGCAACAGATATAGCTGTTTGTTGCT
AACCCTTTTTATCTGAACCTCGATGTCAAAAATACATGCCCGCAAAAAAA
AGACATCCTCTCATAGTTCTTTACACTCATTAATACATACATGCCACATC
AGTATACCCCAAGTATGTGTATACATACAGTTCACATTACATACTTAAAT
CAATTACCTAATTATTCACTTACTTACCTACCCTTTTAATATTTACTATT
TATCCCCATGTGCCTGTGCCTGCATACCTTTCTCAAAGAACTCTTTTTAC
TCAACTGTCTCCGTCAATTTCCTATCTTTCTCGCTTTAATTCCCCACTAC
TCTTTCTATTTATCTCACTTCTTCCCTTTCACCTACTCTTAACTTCTTCT
TTTCCTCTTCTTTCACTCTTCTTTTTCTTCCTCTTTTCTCTTTCTATTCT
TCTTTCTTCTTTCCTTTCCACTCTCTCTTCCTTTCTTTTCCCCTTTCCTT
TTTCTATCTTACTCCTTTTCACTTCTTCCTTCTTTCATCTCCTTTCCTAT
TTTCTCTTCCCTTCTTTCTTCCTCTCCCTCTTTTCTTTCTTCCCCTCTTC
TCTCCTCTCCCTTCTACCTTCCCATTCCTTTTCCCCTTTTTCTCTCTTTT
ATTTTTTTTTTCCTTTCTTATTTCCTATCTTCCTTCTTCCTTTTTTTTCT
CCTTACTCTATCTTTTTCCTTCTTCTTTTTNTTTCCTCTTTTCTTCCCTC
TTTCTCTTTCTCCCCCCACTTTTTTACCTTCTCTCTTCTTCCCCTTTTCA
TCTTCTTCTTTTCCTCTTCTCTTTTCCTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTTCTCTAGTAAAATGTGCTAAGGA
AGTATGAATGCATTGTTTTCCCACAGGAAACCGGGTCAAACATAAATAAA
TTCACGTTTTAGCTACAGTTTTATCTATAACCCAAAAGCTCTTATTTGAA
TTTTGTTTTGCATAAATATTATTTAACATAAAGTATAAATTGTACCATTA
TTTAATATTTATGGTATATCTAGTAAAATTGCCATTTTGCTGAGGAACAG
GAGATTAATTTGTAGATTTTCCATGGAACACAAATTTGCATCATGGAACA
CTAGTACCTCTGAACTATATGAATGATATTGGACCAAGACTGGTGTGGTA
GCACTTAAACTTTATTTATTTTAAATCGTGTATTATATATCAACCTTATT
TTTCTGGAAATTTTCTAGATTTCCTTATAAGCATATGTTCTCAATTAATG
TCCATATATGATCCTTAGAAAATTTGGCTGTGGACTTGACAATAGAATTA
CTTCTTTAAGATCTTATAAACTTTTCAGCATTGCACACATGTAGTTCAAT
TAATATGTAAGTCTCACAATGAGTCCTTGTGGTCTTTTGTTTTTTATTTG
CCCCCTGACTCTCCCCACCCCTCGCCCAACTATCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_n04.b1 MSMg01no051_n04.b1 CHROMAT_FILE:
MSMg01no051_n04.b1 PHD_FILE: MSMg01no051_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:03 2005
         (370 letters)



>mm_chrX_126536412_126537181
          Length = 770

 Score =  609 bits (315), Expect = e-179
 Identities = 345/355 (97%)
 Strand = Plus / Minus

                                                                       
Query: 12  ggaattcaaataataaattatttatttgaagggaaagtgaaaacaaaaataaatatttag 71
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 566 ggaattcaaataataaattatttatttgaagggaaagtgaaagcaaaaataaatatttag 507

                                                                       
Query: 72  ggttgggtaaatgcttttactttcccttttttaatgaagggcctactaaatagcttacaa 131
           ||||||| |||||||||||||||   ||||||||||||||||||||||||||||||||||
Sbjct: 506 ggttggggaaatgcttttacttttttttttttaatgaagggcctactaaatagcttacaa 447

                                                                       
Query: 132 aaatagaactgcttgaataagcaaggaaaaagttcaaagtgaaagacccaaactttgtga 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aaatagaactgcttgaataagcaaggaaaaagttcaaagtgaaagacccaaactttgtga 387

                                                                       
Query: 192 ggcttttcatgttactaacagttacaaatacatgaatgagcaaaagggatgtttcaatgt 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ggcttttcatgttactaacagttacaaatacatgaatgagcaaaagggatgtttcaatgt 327

                                                                       
Query: 252 ttctctatgctatacactaaatctgtaacttttgtatgagttttaatgagatcataaact 311
           |||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 326 ttctctatgctatacagtaaatatgtaacttttgtatgagttataatgagatcataaact 267

                                                                  
Query: 312 tcaactttttcacttattcagtttcatactttgtgagatgatttacaactcattc 366
           ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 266 tcaactttttcacttattcagtttcatactttgtgagatgatttaaaacacattc 212


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no051_n04.g1 MSMg01no051_n04.g1 CHROMAT_FILE:
MSMg01no051_n04.g1 PHD_FILE: MSMg01no051_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:03 2005
         (454 letters)



>mm_chrX_126506999_126507852
          Length = 854

 Score =  845 bits (437), Expect = 0.0
 Identities = 449/453 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttctctagtaaaatgtgctaaggaagtatgaatgcattgttttcccacaggaaaccgg 60
           |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 201 atttctctagtaaaatgtgctagggaagtatgaatgcattgttttctcacaggaaaccgg 260

                                                                       
Query: 61  gtcaaacataaataaattcacgttttagctacagttttatctataacccaaaagctctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcaaacataaataaattcacgttttagctacagttttatctataacccaaaagctctta 320

                                                                       
Query: 121 tttgaattttgttttgcataaatattatttaacataaagtataaattgtaccattattta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgaattttgttttgcataaatattatttaacataaagtataaattgtaccattattta 380

                                                                       
Query: 181 atatttatggtatatctagtaaaattgccattttgctgaggaacaggagattaatttgta 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatttatggtatatgtagtaaaattgccattttgctgaggaacaggagattaatttgta 440

                                                                       
Query: 241 gattttccatggaacacaaatttgcatcatggaacactagtacctctgaactatatgaat 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatttcccatggaacacaaatttgcatcatggaacactagtacctctgaactatatgaat 500

                                                                       
Query: 301 gatattggaccaagactggtgtggtagcacttaaactttatttattttaaatcgtgtatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatattggaccaagactggtgtggtagcacttaaactttatttattttaaatcgtgtatt 560

                                                                       
Query: 361 atatatcaaccttatttttctggaaattttctagatttccttataagcatatgttctcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atatatcaaccttatttttctggaaattttctagatttccttataagcatatgttctcaa 620

                                            
Query: 421 ttaatgtccatatatgatccttagaaaatttgg 453
           |||||||||||||||||||||||||||||||||
Sbjct: 621 ttaatgtccatatatgatccttagaaaatttgg 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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