BAC Information

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BAC

Clone NameMSMg01-052E14
ChromosomeX (Build37)
Map Location 134,528,135 - 134,528,757
singlet/doubletsinglet
Overlap geneIl1rapl2
Upstream gene2810402A17Rik, Zcchc18, BC031748, LOC666277, LOC436231, LOC666288, LOC100041260, LOC100041272, LOC669737, Esx1, EG666303
Downstream gene1700025D03Rik, Nrk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052E14.T7 (MSMg01no052_e14.b1)MSMg01-052E14.TJ (MSMg01no052_e14.g1)
ACCAG280814AG280815
length715715
length of high quality
(start - end)
598 (38 - 635)623 (67 - 689)
definitionCHROMAT_FILE: MSMg01no052_e14.b1 PHD_FILE: MSMg01no052_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:52 2005CHROMAT_FILE: MSMg01no052_e14.g1 PHD_FILE: MSMg01no052_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCC
TTTCCCCCATCATGGCCACCATTTTGTCATTTGTTTTCTTGATTTTAGCC
ATTCTGATTTCTGCACAATGAAATCTCAATATAGTTTAATTGGCATTTCC
ATAATCCATAAGGATTTTGAACACTTTTTATGGTCAAAATGATATTTCTT
ATACATTTCTGTTTCTTTTGTAAACTCTGTTTAGATCAATAGCCCATTTT
GAATTGGATCATTTGCTTTCTTCTGTTTTTTTAGTTATGCACACACACAC
ACACACACACACACACACATATATATATACACACACACATATATATATAT
ACTGATATTAATCCTGTATCAAATATATGTCTGAGAAGATTCTTCCCTAC
TCTATAGGCATTCTTTTTACTCAGTTGATTATTTCCTTTGCTGTTCAGAA
ACATTTTTAGTTTCATGAGGTCCCACTTGTCAATTGTTTGTCTTAATTCC
TGGGCAAATGGAGTTCTATTCAGAAAGTCCTTTCTTACACCTGTATCTTT
TAGCTGTCTGTGTTTTCCTATAGCAGTTTCAGTGTTTTGATTTTAAATTT
TTTATCCATTTGGTGTTAGTGTTTTTCTGCATAGATATGGGTTTAAATTA
ATTCTTTTATATGTGGACATCCAGTTTTCCAGCAGCATTTGTTGAGAATA
CTCTATTCTTTCTGC
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTCCCAACTTCAAAAGGGTTTCTAAGACTTTACT
CCCAGATCAAGGAGAAATTTCAAATTATGTAAGGCACAACTTGCAGATCA
CAAAAGGCATTATTTAAGTGGAGTTTGTGTCTATCATTCAGAAAAGCAAA
ATTGTGAAATGGATGGGCTTTCAAGGCACCTTACATACGGCTGCTCTTCT
TTTCATTCTCCTTCTTTGTCAGGCTTATCTTTACTTTACACTCAAACTTG
TGCTGTGATCATTCCCTGTCTCCCTGTAAACTTGATGTTTTATTCCTTGA
ATATCTCTGCTTTTGTCCTGCATGCTTTTTGCGTATAGCACTTCAGACAT
AGAAGGCCTCTTTAGCTCCTATTATTTTTTATTGGTGGATGACAGACAGA
ATCCTTAGGACTCTATTGAAGGATCTTTAATGCTTTGCATTTCTATTCTC
TGCTGTTTCCTGCTTGCACTCATTCAATTTCACACAGCTCTTGCTGCAAT
CTTCCTAAATTCGTTCTGCAGAAATGCATCACTTTTATTTTTACCTCTTT
TGCTTTCACTTTGTTCCCAATTACCAATGTAACTGGCTTCTGACTTCTGC
TCACTTCAGGAATACCCTTACCTTTCACATCATCGTTTACTCTTTTGACA
TGCAAACTTGACTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_e14.g1 MSMg01no052_e14.g1 CHROMAT_FILE:
MSMg01no052_e14.g1 PHD_FILE: MSMg01no052_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:52 2005
         (623 letters)



>mm_chrX_134527935_134528957
          Length = 1023

 Score = 1205 bits (623), Expect = 0.0
 Identities = 623/623 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcccaacttcaaaagggtttctaagactttactcccagatcaaggagaaatttcaaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 ctcccaacttcaaaagggtttctaagactttactcccagatcaaggagaaatttcaaatt 764

                                                                       
Query: 61  atgtaaggcacaacttgcagatcacaaaaggcattatttaagtggagtttgtgtctatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 atgtaaggcacaacttgcagatcacaaaaggcattatttaagtggagtttgtgtctatca 704

                                                                       
Query: 121 ttcagaaaagcaaaattgtgaaatggatgggctttcaaggcaccttacatacggctgctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 ttcagaaaagcaaaattgtgaaatggatgggctttcaaggcaccttacatacggctgctc 644

                                                                       
Query: 181 ttcttttcattctccttctttgtcaggcttatctttactttacactcaaacttgtgctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ttcttttcattctccttctttgtcaggcttatctttactttacactcaaacttgtgctgt 584

                                                                       
Query: 241 gatcattccctgtctccctgtaaacttgatgttttattccttgaatatctctgcttttgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 gatcattccctgtctccctgtaaacttgatgttttattccttgaatatctctgcttttgt 524

                                                                       
Query: 301 cctgcatgctttttgcgtatagcacttcagacatagaaggcctctttagctcctattatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 cctgcatgctttttgcgtatagcacttcagacatagaaggcctctttagctcctattatt 464

                                                                       
Query: 361 ttttattggtggatgacagacagaatccttaggactctattgaaggatctttaatgcttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ttttattggtggatgacagacagaatccttaggactctattgaaggatctttaatgcttt 404

                                                                       
Query: 421 gcatttctattctctgctgtttcctgcttgcactcattcaatttcacacagctcttgctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gcatttctattctctgctgtttcctgcttgcactcattcaatttcacacagctcttgctg 344

                                                                       
Query: 481 caatcttcctaaattcgttctgcagaaatgcatcacttttatttttacctcttttgcttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 caatcttcctaaattcgttctgcagaaatgcatcacttttatttttacctcttttgcttt 284

                                                                       
Query: 541 cactttgttcccaattaccaatgtaactggcttctgacttctgctcacttcaggaatacc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 cactttgttcccaattaccaatgtaactggcttctgacttctgctcacttcaggaatacc 224

                                  
Query: 601 cttacctttcacatcatcgttta 623
           |||||||||||||||||||||||
Sbjct: 223 cttacctttcacatcatcgttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space:   620969
Effective search space used:   620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)