XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTT
CACAAAACGCATGGAAATTCTTTTTCTTTCCTTTTCTTTCTTTTCTTTTC
TTTTCTTTTCTTTTCTTTTCTCTTCTTTTTCTTTTCTTTCTTTTTTTTCT
TTTTTTAGTTTTTAAATTTATTTTCTTTTTTTTTCTCATTTTTCCTTAGA
TATTTTCTTTATTTACATTTCAAATGCTATCCGAAAGTTCCCTATACCCT
CCCCCCACCCTGCTCCCCTACTCACCCATTCCCACTTCTTGGCTCTGGTG
TTCCCCTGTACTGGAACATAAAGTTTGCAATACCAAGGGGCCTTTCTTTG
CAATGCTGGCTGACTAGGCTATCTTCTGCTACATATGTAGCTAGAGACAA
GAGCATCAGCCACCAAACCCAGACACTACTGCATATACCAGCAAGATTTT
GCTGAAGGGACCCTGATATAGCTATCTTGTATGAGGCTATGCCAGTGCCT
GGCAAATACAGAAGTGGAGCTCACAGTCATCTATAGGATAGAACACAGGG
CCCCCATTGGAGAAGCTAGAGAAAGCACCCAAGGAGCTGAAGGGTCTGCA
ATCCTATAGGTGGAACAACAATATTAATTCTTTTCTTTTTAAATTCCTTT
GTGTATTTGTTTCATTTTTTAGACACAATTTCTACATGTAGTCCAGGCTC
TCATGGAACTCCCAATCTATN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXACCTTATTTATTTTTTTAAAGATTTACTTATTTAA
ATTTATGTGAATACACTGTCACTGTTTTCAGACACACCAGAAGAGGGCAT
CAAATCCCACTACAGTTGATTGTGAACCACCATGAGTTTGCTGGGAATTG
AACTCAGGACCTCTGGAAGAGCAGTCAGTACTCTTAAATGCCAAGCCATC
TCTACATCCCCACATTATTTAATTTGTATAGTAGTAGAAAATGTAGCTGT
GAATTCACATCAGAATTTAAGAAAACAGTTGTCAGAACAAATAAGGGGAA
TATGAAAGTGATTAAGAAATGCAATTATGCCTTCATAACTCCAAGAATAT
TATTGTCTTAAAATGATGTTTTGTTTTGAAAAATACACATCTACTTATAA
GCTAAAATATATTTCAAATATTGCTATACTGATTTCTTGAAGTCCTCAAA
TTGCTAAAGTCAGCATATATATATATAAAATTGGCTGTATTTTATTTTTA
TAATCATCAACAGCTTGAATTTTAAAATAAATTTTAGATTATCTCATTAC
TTTATGTGTATGACATTCTGACAGTTTGTCTCCATAAATATGTACACCAC
ACACATGCCTGATGCCTTCCCAGTTCAAAAGAGCATCCGATTCTCTGGAA
CTGGAGTTTCAGTTTTGAAC

Query= MSMg01no052_k12.g1 MSMg01no052_k12.g1 CHROMAT_FILE:
MSMg01no052_k12.g1 PHD_FILE: MSMg01no052_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:20 2005
         (602 letters)



>mm_chrX_111422136_111423135
          Length = 1000

 Score = 1145 bits (592), Expect = 0.0
 Identities = 599/602 (99%), Gaps = 2/602 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   accttatttatttttttaaagatttacttatttaaatttatgtgaatacactgtcactgt 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accttatttaattttttaaagatttacttatttaaatttatgtgaatacactgtcactgt 260

                                                                       
Query: 61  tttcagacacaccagaagagggcatcaaatcccactacagttgattgtgaaccaccatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcagacacaccagaagagggcatcaaatcccactacagttgattgtgaaccaccatga 320

                                                                       
Query: 121 gtttgctgggaattgaactcaggacctctggaagagcagtcagtactcttaaatgccaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttgctgggaattgaactcaggacctctggaagagcagtcagtactcttaaatgccaag 380

                                                                       
Query: 181 ccatctctacatccccacattatttaatttgtatagtagtagaaaatgtagctgtgaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccatctctacatccccacattatttaatttgtatagtagtagaaaatgtagctgtgaatt 440

                                                                       
Query: 241 cacatcagaatttaagaaaacagttgtcagaacaaataaggggaatatgaaagtgattaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacatcagaatttaagaaaacagttgtcagaacaaataaggggaatatgaaagtgattaa 500

                                                                       
Query: 301 gaaatgcaattatgccttcataactccaagaatattattgtcttaaaatgatgttttgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaatgcaattatgccttcataactccaagaatattattgtcttaaaatgatgttttgtt 560

                                                                       
Query: 361 ttgaaaaatacacatctacttataagctaaaatatatttcaaatattgctatactgattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgaaaaatacacatctacttataagctaaaatatatttcaaatattgctatactgattt 620

                                                                       
Query: 421 cttgaagtcctcaaattgctaaagtcagcatatatatatataaaattggctgtattttat 480
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 621 cttgaagtcctcaaattgctaaagtcagcatatatatata--aaattggctgtattttat 678

                                                                       
Query: 481 ttttataatcatcaacagcttgaattttaaaataaattttagattatctcattactttat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ttttataatcatcaacagcttgaattttaaaataaattttagattatctcattactttat 738

                                                                       
Query: 541 gtgtatgacattctgacagtttgtctccataaatatgtacaccacacacatgcctgatgc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gtgtatgacattctgacagtttgtctccataaatatgtacaccacacacatgcctgatgc 798

             
Query: 601 ct 602
           ||
Sbjct: 799 ct 800


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1000
Length adjustment: 10
Effective length of query: 592
Effective length of database: 990
Effective search space:   586080
Effective search space used:   586080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)