BAC Information

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BAC

Clone NameMSMg01-052L05
ChromosomeX (Build37)
Map Location 48,702,822 - 48,703,111
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1324, LOC100041788, 6720401G13Rik, 2610018G03Rik, LOC100040422, Rap2c, LOC385355, Mbnl3, LOC665866, LOC385356
Downstream geneHs6st2, Usp26, LOC100040479, LOC665888, 1700080O16Rik, LOC100040495, Gpc4, Gpc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052L05.T7 (MSMg01no052_l05.b1)MSMg01-052L05.TJ (MSMg01no052_l05.g1)
ACCAG281121AG281122
length696694
length of high quality
(start - end)
464 (46 - 509)291 (72 - 362)
definitionCHROMAT_FILE: MSMg01no052_l05.b1 PHD_FILE: MSMg01no052_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:23 2005CHROMAT_FILE: MSMg01no052_l05.g1 PHD_FILE: MSMg01no052_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGATGCGCGGA
ATTCCCACCCTTGCCCTCCCCATACCTGATCCTCACCTCTGTTCCCCTTC
CCATCCCTCTCTCACCCAGTTCCCTCTCCATCCACTTCTAATGGATGTCT
ATTTTATTTACCCTTCTGAGTGAAATTCAAGCATTCTTTCTTGGGTCCTC
TTTTTTACTTAGCTTCTTTGGGTCTGTGGATTGTAGCATGGATATCCTGT
ACGTTATGGTAATGTCCACTTATCAGGCTTTTCTTTCTAGGTCTGTGGTA
CCTCACTCAGGATGATATTTTTTTAGTTTCATCCACTTGACTTCAAATTT
CATGATGTCCTCATTTTTAATGGCTGAATAGTATTCCATTGTGTAAATGA
ACCACATTTTCTGCATCTGTCCTTCGGTTGAAGAACATCTGGGTTGTTTA
CAATTTCTGGCTATTACAAATAAAGCTGATATGAACATAGTTGAGCAAGT
GTCCTTGTGGTAGGGTAGAACATCTTTTGGGTATATTCCCAGGAGTGGTA
TAGCTGGATCTTGAGGTAGAACTATTTCCAGTTTTCTGAGAAACTAACAT
TGACAAATAATACATGGGACTACCTACAACTGCCCAGCTTTCTGTTTAGG
CCACGGAACCTGTTCATATGGACAAATGGTTCCCTACCTAATGGAC
TGAACGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGACAAAGCAACTGTTCACACTGCAGAAG
GGGGAATGCTGTGTGATGAATACATAAATAATCTAATAAAGAAGAATAAA
AGGTAGCAGCTGTCAAGTGCTTTCTAGGCAAGAAGAATTATAGAGTGCAA
TGATTGCTGGCAAGCTGAAGAGATCTGGATGCCAAGGAGCTAGCAATGGG
CTTTTGCTTTTAATCAGCCAGTTGATGCCACATTTCATGAGCGTTCCTCA
GTATTGTCACCTTTCCATTTTTAACCAAACAGAAGTTCAAGAGTGCCGAC
ACCCAGAGGTGGAAGGACTGGTCCTTAAGGCTCTTAATTGTAAGCCTCTC
ACATTCCAAATGACAAATAGTTGTCATCATAGATATCCCTTAGCATAGTG
GAGCTTTGGCACAGCAGAACAGAAATTAGACTTCCTTACTTTCTGGTCTC
TGTCACTTCAATGGCTTCCAAGTTGAACACTAAGACCATTACCTGGAAGC
ACCACAGAGTGTTAGGGAAATGGCTTGCAAGCAATTCCCGGGTGCATTTT
GGCCTGTTCGCTATCACGCGGGGATGAGTCCTTTGCGTTGAATCTTGAAA
GAGTGTACGATCCGCCCAAGTCTACCACTAAATAGATCCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_l05.g1 MSMg01no052_l05.g1 CHROMAT_FILE:
MSMg01no052_l05.g1 PHD_FILE: MSMg01no052_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:23 2005
         (291 letters)



>mm_chrX_48702622_48703312
          Length = 691

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgacaaagcaactgttcacactgcagaagggggaatgctgtgtgatgaatacataaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tgacaaagcaactgttcacactgcagaagggggaatgctgtgtgatgaatacataaataa 431

                                                                       
Query: 61  tctaataaagaagaataaaaggtagcagctgtcaagtgctttctaggcaagaagaattat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tctaataaagaagaataaaaggtagcagctgtcaagtgctttctaggcaagaagaattat 371

                                                                       
Query: 121 agagtgcaatgattgctggcaagctgaagagatctggatgccaaggagctagcaatgggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 agagtgcaatgattgctggcaagctgaagagatctggatgccaaggagctagcaatgggc 311

                                                                       
Query: 181 ttttgcttttaatcagccagttgatgccacatttcatgagcgttcctcagtattgtcacc 240
           |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 310 ttttgcttttaatcagccagttgatgccacatttcaagagtgttcctcagtattgtcacc 251

                                                             
Query: 241 tttccatttttaaccaaacagaagttcaagagtgccgacacccagaggtg 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttccatttttaaccaaacagaagttcaagagtgccgacacccagaggtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)