BAC Information

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BAC

Clone NameMSMg01-052P14
ChromosomeX (Build37)
Map Location 119,133,916 - 119,134,204
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC385419, EG434907, EG245575
Downstream geneLOC100039544, Nap1l3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052P14.T7 (MSMg01no052_p14.b1)MSMg01-052P14.TJ (MSMg01no052_p14.g1)
ACCAG281321AG281322
length699697
length of high quality
(start - end)
290 (70 - 359)300 (68 - 367)
definitionCHROMAT_FILE: MSMg01no052_p14.b1 PHD_FILE: MSMg01no052_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:45 2005CHROMAT_FILE: MSMg01no052_p14.g1 PHD_FILE: MSMg01no052_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCGCACCTAGCGCGGAATTCA
ATCCAATACCCACAAAAGACTCTTATTCCAAATCCATTTCCCATTCTTTT
CAAATTTAATGTTCATCACAATCCCTGAATAGACAGCTAAGCACAGATTC
TTTGAATTTTTCCCTTGACAAATATTTGTGTGGGTGAGTGTTATTTTTGG
CAAGAAAATATATCTTTTTCCTTTTGTTTGCCAGAAAAAGAAAAGTGTAC
ATTCAAAGCCAATGCTTTGAAACAAATAAAACTAGATCTGACCTAGTTCA
CACAGATTTTGGAATATGTTTTTTGAATCCATAGTGTAGTGTCTCTGTTT
CTCAAACCATGTCTAGAACAGCTCTGAAGGATTCAATAGAGAAGATAGAA
AATGGGTCAATTTTAAATAAGTTATCATAAATCAAAGGATGAGATGGGTT
TTTTTTAAAGAATTAAGATGAACTAGTTTGAAAGAATCACATCACTGGGT
ATGGAAGCCTACACTGTGAGACACACCAAAAGCACAGTCAAGGGGATTAC
TATAAATTTTATATCAACTTGGCCTATATATTAAGTACAAAGTTCCAGGA
AGCCTTGTGTTACATGATGAGACAGTGTCTCAAAACCAACAAGGGAAATG
TAGTTGTGGAGTAATCGGTCTCTATTTGGTTGTACCCCAAGAAACCTTA
CTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCTGAGAAGCAC
CTGAAAAAATGTTCAACATCCTTAATCATCAGAGAAATGCAAATCAAAAC
AACACTGAGATTCCATCTCATACCAGTCAGAATGGCTAAGATCAAAAATT
CAGGTGACAACAGATGCTGGCGAGGATGTGGAGATAGAGGAACACTCCTC
CATTGTTGGTTTGAGTGCAAGCTTGTACAACAACTCTGGAAATCAGTCTG
GTGGTTCCTCAGAAAATTGGACATAGTACTATCGGAGGATCCCGCAATAC
CTCTCCTGGGCATATATCCAGAAGATGTCCCAACAGCTTAGAAGGATACA
TGCTCCACTATGTTCATAGCAGACTTATTTATAATAGCCAGAAGCTGGAA
AGAACCCAGATGCCCCTCAACAGAGGAGTGGATACGAATACAATATGGTA
CATTTACACAATGGAGTACTACTCGGCTATTAAAAAACCTGAATTTATGA
AACTCCTAGGCAAATGTTTGGACCTGGAGGGCATCATCCTGAGTTAGGTA
ACACAATCACAAAAGAACTCAAATGATATGTACTCCCTGATAAGCGGAAA
TTATCCCAGAAACTTACCTAAGCGAGATATAAAAAATAATTTGCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_p14.b1 MSMg01no052_p14.b1 CHROMAT_FILE:
MSMg01no052_p14.b1 PHD_FILE: MSMg01no052_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:45 2005
         (290 letters)



>mm_chrX_119133716_119134404
          Length = 689

 Score =  501 bits (259), Expect = e-146
 Identities = 283/293 (96%), Gaps = 7/293 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcttattccaaatccatttcccattcttttcaaatttaatgttcatcacaatccctgaa 60
           |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 489 ctcttattccaaatccatttcccattcttttcaaatttaatgctcatcagaatccctgaa 430

                                                                       
Query: 61  tagacagctaagcacagattcttt-gaatttttcccttgacaaatatttgtgtgggtgag 119
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 429 tagacagctaagcacagattctttggaatttttcccttgacaaatatttgtgtgggtgag 370

                                                                       
Query: 120 tgttatttttggcaagaaaatatatctttttccttttgtttgccagaaaaagaaaagtgt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tgttatttttggcaagaaaatatatctttttccttttgtttgccagaaaaagaaaagtgt 310

                                                                       
Query: 180 acattcaaagccaatgctttgaaacaaataaaactagatctgacctagttcacacagatt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 acattcaaagccaatgctttgaaacaaataaaactagatctgacctagttcacacagatt 250

                                                                
Query: 240 ttggaatatg--ttttttgaatccatagtgtagtgtctctgtttctcaaacca 290
           |||||| |||     |||| |||||||||||||||||||||||||||||||||
Sbjct: 249 ttggaa-atgca---tttgtatccatagtgtagtgtctctgtttctcaaacca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 689
Length adjustment: 9
Effective length of query: 281
Effective length of database: 680
Effective search space:   191080
Effective search space used:   191080
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)