BAC Information

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BAC

Clone NameMSMg01-053A15
ChromosomeX (Build37)
Map Location 54,944,387 - 54,944,725
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039342, Fhl1, Mtap7d3, Gpr112, Brs3, Htatsf1, Vgll1, Cd40lg, Arhgef6, Rbmx, Snord61, Gm364, Gpr101, Aldoa-ps
Downstream geneEG666441, LOC666447, Zic3, LOC631581
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053A15.T7 (MSMg01no053_a15.b1)MSMg01-053A15.TJ (MSMg01no053_a15.g1)
ACCAG281369AG281370
length694701
length of high quality
(start - end)
342 (45 - 386)179 (75 - 253)
definitionCHROMAT_FILE: MSMg01no053_a15.b1 PHD_FILE: MSMg01no053_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:50 2005CHROMAT_FILE: MSMg01no053_a15.g1 PHD_FILE: MSMg01no053_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCTAAGTTCCAAACCCTCTGTCCACATGAATCTGTTCTCTATACGG
AAAGACAATCACAGGTCTATTAGCCACATGCTTCAGGCTCCATTAGTGTT
GTTTGCATTGTTGCTGTTTGGAATGTGTCTGTTGTTCTGTGTCTACTGAT
TTGCTAACTGTAACATTTGCAATGTCCAAAGTGGGGAGGACTGTGAACCA
ATAATTTAATTCGTTGGTTATTTTTTTAATGGAATCCATAAGTTTGAATG
ACCCTCACATGCCATTTAATTCAGTCTCTCTTAGCTTTAGAAAGCTGAGT
CCCCAGAAAGAGAAATGACTGGCTTAAGGTCACAGAGAGTAGAAGAGGAA
GACTACAGTTGTAATTACTTCTTTGTAGCCCAGAACCTGTTTCTTTGATT
GTAGCTAAAGTTGTCTGCTCTCTTTACATTAGGGAGAATGGTTTTCATAC
TATAGTTAACTTTGATTGTGCTCATGCTGTTTCAAACTTTGGGCTAAGTA
CTATTTGTTCATTTCACATGTTTTATACCTGCTTCTTGGGCTAAGTAGTG
ATGGAATGCTTGTTGCTTACCCCAAAGGTAAGTAGAATTGCAAGATTACA
AATACTAAATTTTCTCCCAGTCCCCCTCAATATCCCATTTCTCT
ACATTACAGTGGGAGGCCTGGCGACCGCCTGGTCAACACATGGAGGTGAA
CTATAGAAGTTCCAAAAGAAATCAGCAGAGTGGAAGGAAATCTTTGGCAG
CTATACATCTTACATCTAATCCAGAATTAATATCCAGACTACATTTAAAA
CCAAAAAATATACACAAACAAACAACCAATTTTAAAAATAGGCTATACAT
CTTAACAGACTGTTCTCAGAAGAAAGTCTAAAAGTGATTAAGGAATATCT
CAGATAGTGTTCAACATCCTTAGCCATTAGGAAAATGCAAATCAAAACAG
CTTTGAGATTTCATCTTATCTGAGTCTGAATGCCTAAGATCAAGAAAAGA
ACTGACTACAATTATTGGTCGGATTGCAAACCAGTGAAGTCACTTTGGAA
ATTATATCAAAAAATCCAAAATCCAATCTATCTTATGACCCAGTTATATC
ACAGATTACCGCATGCCCACAGGACTCCCTGGACATCATATTCATCATAT
ACAAATAGCCCTATAACTTATTCACCTCATGAATGTATAATATACAATGG
GGCATATATATCTATATATACATATATTTACACATCCCTTTACACACTAC
GATATTTTATTCTCCTGTTACAAAAAAGAATCCCAGTTAAATTGTCATTC
TCTTTCCTACGCATCTCCCTTTTCCCATCTGTTGCGTGTAATTAACTCCT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_a15.b1 MSMg01no053_a15.b1 CHROMAT_FILE:
MSMg01no053_a15.b1 PHD_FILE: MSMg01no053_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:50 2005
         (342 letters)



>mm_chrX_54944183_54944925
          Length = 743

 Score =  594 bits (307), Expect = e-174
 Identities = 331/341 (97%), Gaps = 5/341 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccctaagttc---caaaccctctgtccacatgaatctgttctctatacggaaaga 61
           ||||||||||||  |   ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 205 gaattccctaag--catgcaaaccctctgtccacatgaatctgttctctatacagaaaga 262

                                                                       
Query: 62  caatcacaggtctattagccacatgcttcaggctccattagtgttgtttgcattgttgct 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 caatcacaggtctattagccacatgcttcaggctccattagtgttgtttgcattgttgct 322

                                                                       
Query: 122 gtttggaatgtgtctgttgttctgtgtctactgatttgctaactgtaacatttgcaatgt 181
           ||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 323 gtttggaatatgtctgttgttctgtgtctactgattttctaaccgtaacatttgcaatgt 382

                                                                       
Query: 182 ccaaagtggggaggactgtgaaccaataatttaattcgttggttatttttttaatggaat 241
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 383 ccaaagtggggaggactgtgaaccaataatttatttcgttggttatttttttaatggaat 442

                                                                       
Query: 242 ccataagtttgaatgaccctcacatgccatttaattcagtctctcttagctttagaaagc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ccataagtttgaatgaccctcacatgccatttaattcagtctctcttagctttagaaagc 502

                                                    
Query: 302 tgagtccccagaaagagaaatgactggcttaaggtcacaga 342
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgagtccccagaaagagaaatgactggcttaaggtcacaga 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 743
Length adjustment: 9
Effective length of query: 333
Effective length of database: 734
Effective search space:   244422
Effective search space used:   244422
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)