BAC Information

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BAC

Clone NameMSMg01-056M24
ChromosomeX (Build37)
Map Location 160,945,215 - 161,125,042
singlet/doubletdoublet
Overlap geneAsb9
Upstream geneGrpr, 1700045I19Rik, Ap1s2, Zrsr2, Car5b, Siah1b, Tmem27, Ace2, Bmx, Pir, Figf, Piga, Asb11
Downstream geneMospd2, Fancb, LOC627045, Glra2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056M24.T7 (MSMg01no056_m24.b1)MSMg01-056M24.TJ (MSMg01no056_m24.g1)
ACCAG284126AG284127
length697706
length of high quality
(start - end)
284 (66 - 349)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no056_m24.b1 PHD_FILE: MSMg01no056_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:34 2005CHROMAT_FILE: MSMg01no056_m24.g1 PHD_FILE: MSMg01no056_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(161,124,759 - 161,125,042)(160,945,215 - 160,945,503)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTCCAAAGAGGATCCGCGGAATTCTTT
GTCTTCCTTTCTTCAACCAACTGAAATCACATTATATATCTCCCTTACAT
CAACCAAATCCACATGAAAGACCAGGTTACATTCCTGATCTGTTAACTTT
GAGTTAGGGTATGTGACTCCCTTCAGATAATAGAATCTAGTGGACATGAT
ATGATTTTGAATTTGAGAGCTATTTGCTCTCTTTTTTAGCAGCATGGTGC
AATGACATGATAATAAAGAATAAAGTGTGCATGTGTAATGTTTTGAAAGA
ATAAATGAAAATATTATCAAAAGTGTAACCAAATAACAATAAAATGAAAA
ATATGTGAGGCGAATAAATCAGGAAAAGAGGAAACTATAACAGCCACCAA
GGGAAGAGAGTGATTGTCCTTTGCTCTAGTCTTTTCTTTCTCCTTGTACT
TTTAGGTCTTGGACTGAGACATCTGTACTTCACCATATACCCTGGAAGAT
TAGATGACTGTCTCACTGACCCACATTCAAGTGAGTTCCAAGGGCCAGAA
CCTAAAGCCTAGAACTCAGAGCATAGATACCAGACTAGTGCTGTCTCATG
TGATGTTGTGTTAGCATATGACTAGCTTATTAGTGCTTCGATAAATACCT
AAGATACACAGTGAAGATCAGGACACACTTGTTTTGAGCTCTGTGTT
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGGGCTTAAGCATTCAAGGAGACA
GCATCACACTCAGAACACTGGTCGGCTGCCCACAACACTTTTCTATTAGA
AGGACAATAAAGAGGTTTCAAAGTCCTTTAGGACTTAGTGATGTCTTTCT
GAACAGGTTTGTGAAAGGATCACAACAGAAAGTAGACAATACGAAATGCC
TTCCCTCACTGATTGAGGAGACAGAGCTGCACATTCTTTTGTTTGTTCAT
TTGTTTTTTTATTTACCCAAACTTCATATATGACAGAGAAAGGGCTTTAA
TTCTGAAGGAAAGAGAGATTGCATTGTGCCATTTGATTCAATATTGTGGC
AAACGGTGAGAAAGCATCTTAAATTGTGAAGTTATTTTTTAAACCCCAAA
TTAGGTTAGACAGAAGAACCAGATAAGAGGAAAGCTGGAAAGAGAGCTGG
CTTAGTGCACTAGGGCGTGGCAGGTGGCAGAGTTTTCTTTCTCTCACTCT
GTTATATGTACACGCTCATGTGAGTGTGTGTACAGAAGAGTATGCATGCA
TGTGTATGTAGATATGTGAAGGTCAGAGGTCAGTGCCGTGCGTAATCTCT
CTTCATCTTATTTTTTGAGGAGGGCCTCTCACTGAAGCTGGAGCTTCCTG
ATCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_m24.b1 MSMg01no056_m24.b1 CHROMAT_FILE:
MSMg01no056_m24.b1 PHD_FILE: MSMg01no056_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:34 2005
         (284 letters)



>mm_chrX_161124559_161125242
          Length = 684

 Score =  534 bits (276), Expect = e-156
 Identities = 282/284 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   accaactgaaatcacattatatatctcccttacatcaaccaaatccacatgaaagaccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 accaactgaaatcacattatatatctcccttacatcaaccaaatccacatgaaagaccag 425

                                                                       
Query: 61  gttacattcctgatctgttaactttgagttagggtatgtgactcccttcagataatagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gttacattcctgatctgttaactttgagttagggtatgtgactcccttcagataatagaa 365

                                                                       
Query: 121 tctagtggacatgatatgattttgaatttgagagctatttgctctcttttttagcagcat 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 364 tctagtggacatgatatgattttgaatttgagagctatttgctctcctttttagcagcat 305

                                                                       
Query: 181 ggtgcaatgacatgataataaagaataaagtgtgcatgtgtaatgttttgaaagaataaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ggtgcaatgacatgataataaagaataaagtgtgcatgtgtaatgttttgaaagaataaa 245

                                                       
Query: 241 tgaaaatattatcaaaagtgtaaccaaataacaataaaatgaaa 284
           | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ttaaaatattatcaaaagtgtaaccaaataacaataaaatgaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no056_m24.g1 MSMg01no056_m24.g1 CHROMAT_FILE:
MSMg01no056_m24.g1 PHD_FILE: MSMg01no056_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:34 2005
         (289 letters)



>mm_chrX_160945015_160945703
          Length = 689

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggcttaagcattcaaggagacagcatcacactcagaacactggtcggctgcccacaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggcttaagcattcaaggagacagcatcacactcagaacactggtcggctgcccacaac 260

                                                                       
Query: 61  acttttctattagaaggacaataaagaggtttcaaagtcctttaggacttagtgatgtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttttctattagaaggacaataaagaggtttcaaagtcctttaggacttagtgatgtct 320

                                                                       
Query: 121 ttctgaacaggtttgtgaaaggatcacaacagaaagtagacaatacgaaatgccttccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctgaacaggtttgtgaaaggatcacaacagaaagtagacaatacgaaatgccttccct 380

                                                                       
Query: 181 cactgattgaggagacagagctgcacattcttttgtttgttcatttgtttttttatttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactgattgaggagacagagctgcacattcttttgtttgttcatttgtttttttatttac 440

                                                            
Query: 241 ccaaacttcatatatgacagagaaagggctttaattctgaaggaaagag 289
           |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaaacttcagatatgacagagaaagggctttaattctgaaggaaagag 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)