XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATAT
TTCCCGTGTATCTTCTCAGATGTACCAGAGGGGCATTTTATCTTTGAGGA
TGCTAGTGGTGTGAACTTTACTTTTAATAAAACAGGAGTGTTTACATATT
TGAATACGAAAAGCACATGGTTAAATTTAAGTCCTGGGGAAGAGGTTATG
GGTTTCAAAAGGAGAAAAATACCAAGTTTTTAAATAAAATACTCTTGTAA
TACAGGCTTGCTCTGAGTGTATGAATGGAAGGGAGATGAGAATAGGTGGA
AAAGACATAGGTAGCCAAAAATAAAAGACTGTTTGATCACATTCAAAGGG
CAATGGGGAGGAAATAGTTAAATTATATGTCAAGGACTGAATCCTAAGCA
AAAGGATAAAGAGAACAGTAGATACGGAAGAGAGTTTGAGGAGGTAAAAA
TAGTTCTATTTCGTGTATGTGAAATTAGAAATGGCATAAGGATAGAACAT
GTAATATAAAACTGTCTAGCAAGCAGCTAAAAAGGCTGAACTGGTATTGA
AAAATAGCCATATTTTTTGAGGTATTTACATTGAAGTGAAAGATAAAGCC
ACAATAAACCAACAATTTTATCAAAAACAGTATTTATGATGGAAAGAGCT
GTGGAAAAAATCTCAGACAGACACTCATTTAGGAGTCAGAA

NCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAAT
GGCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCT
GGAAATCAGTCTGGCGGTTCCTCATAAAACTGGACATAGTACTACCGGAG
GATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGG
TAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAG
CCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAG
AAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAA
TGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCC
TGAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTG
ATAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAA
TTTGCT

Query= MSMg01no056_o18.b1 MSMg01no056_o18.b1 CHROMAT_FILE:
MSMg01no056_o18.b1 PHD_FILE: MSMg01no056_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:42 2005
         (640 letters)



>mm_chrX_154405545_154406584
          Length = 1040

 Score = 1164 bits (602), Expect = 0.0
 Identities = 628/640 (98%), Gaps = 7/640 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatat----ttcccgtgtatcttctcagatgtaccagaggggcattttatcttt 59
           |||||||||||    ||   ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 203 ggaattcatataaagtt---gtgtatcttctcagatgtaccagagaggcattttatcttt 259

                                                                       
Query: 60  gaggatgctagtggtgtgaactttacttttaataaaacaggagtgtttacatatttgaat 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gaggatgctagtggtgtgaactttacttttaataaaacaggagtgtttacatatttgaat 319

                                                                       
Query: 120 acgaaaagcacatggttaaatttaagtcctggggaagaggttatgggtttcaaaaggaga 179
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 320 acgaaaagcacatggttaaatttaagtcctggggaagaggttatgggttttaaaaggaga 379

                                                                       
Query: 180 aaaataccaagtttttaaataaaatactcttgtaatacaggcttgctctgagtgtatgaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaaataccaagtttttaaataaaatactcttgtaatacaggcttgctctgagtgtatgaa 439

                                                                       
Query: 240 tggaagggagatgagaataggtggaaaagacataggtagccaaaaataaaagactgtttg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tggaagggagatgagaataggtggaaaagacataggtagccaaaaataaaagactgtttg 499

                                                                       
Query: 300 atcacattcaaagggcaatggggaggaaatagttaaattatatgtcaaggactgaatcct 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atcacattcaaagggcaatggggaggaaatagttaaattatatgtcaaggactgaatcct 559

                                                                       
Query: 360 aagcaaaaggataaagagaacagtagatacggaagagagtttgaggaggtaaaaatagtt 419
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 560 aagcaaaaggataaagagaacagtagatatggaagagagtttgaggaggtaaaaatagtt 619

                                                                       
Query: 420 ctatttcgtgtatgtgaaattagaaatggcataaggatagaacatgtaatataaaactgt 479
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctatttcgtgtgtgtgaaattagaaatggcataaggatagaacatgtaatataaaactgt 679

                                                                       
Query: 480 ctagcaagcagctaaaaaggctgaactggtattgaaaaatagccatattttttgaggtat 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctagcaagcagctaaaaaggctgaactggtattgaaaaatagccatattttttgaggtat 739

                                                                       
Query: 540 ttacattgaagtgaaagataaagccacaataaaccaacaattttatcaaaaacagtattt 599
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ttacattgaagtgaaagagaaagccacaataaaccaacaattttatcaaaaacagtattt 799

                                                   
Query: 600 atgatggaaagagctgtggaaaaaatctcagacagacact 639
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 atgatggaaagagctgtggaaaaaatctcagacagacact 839


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)