BAC Information

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BAC

Clone NameMSMg01-057F11
ChromosomeX (Build37)
Map Location 6,575,205 - 6,575,645
singlet/doubletsinglet
Overlap geneCcnb3
Upstream geneNudt11, LOC208428, AU022751, Nudt10, Bmp15, Shroom4, LOC100043937, Dgkk
Downstream geneAkap4, Clcn5, Usp27x, 2010204K13Rik, LOC668973, Ppp1r3f, 4930524L23Rik, Foxp3, Ccdc22, Cacna1f, Syp, LOC632264, Lmo6, Plp2, Pdzx, Ppia-psx_14.1, Gpkow, LOC100043938, Wdr45, Praf2, Ccdc120, EG236622, Tcfe3, Gripap1, LOC100043939, Kcnd1, Otud5, Pim2, Slc35a2, Pqbp1, Timm17b, Pcsk1n, Eras, Hdac6, LOC668974, Gata1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057F11.T7 (MSMg01no057_f11.b1)MSMg01-057F11.TJ (MSMg01no057_f11.g1)
ACCAG284520AG284521
length707709
length of high quality
(start - end)
446 (42 - 487)339 (71 - 409)
definitionCHROMAT_FILE: MSMg01no057_f11.b1 PHD_FILE: MSMg01no057_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:15 2005CHROMAT_FILE: MSMg01no057_f11.g1 PHD_FILE: MSMg01no057_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAGAGGATCCGCGGAAT
TCCTTTGATCCTTGAATCTCCTCCTATAAAACCTACCTACGAAAGGCTAT
TCTACTTCCTGCTATCACCTCAAGTGAGAGACCAAGCCTCTGTGCAATAT
TCTAGATCCAAATGATGGCATAAAAATCATGGAAAATCTGAAACTTGTTA
TCAAATGTGTAGAAATATGGGTATCCTGGATACCTAGTCTATGTTTGACA
TATGAAGCTGGTGCGTTACTGTGTAACTGAGCCCTTTATTTGAGGGATCT
GATGTGCTCAGTGTCTTAATTGAATCAAACTGTTCAATAGTCAATTGTGT
TAGAGAAATAGGAAATTGCTGCTGTACAAAATGTATTACCTTTGGATGTT
AAAAAAAAACCCCCAACTCTTGAAAGACTCCGAGAGGAGTCCCTCGCTCA
GGCCTCAGGACAATAGCAGACACCCAAGAACTCACGACAGACCGAGCTTG
TTGCAAACCACATGAGGCTTTATTCAGGGAAAGCCAGAGCTCTGGGGACG
ACTCATATCCCACGCAGGGGTAGAGGAGTCGACCTCGAGGGGAAAGGGGT
CCCAGTTTTTATAGGTCCTCATGGGGTAAAGGAGAAGGGGGAGAGTAGGG
GACTTCTCTATCCCAACACGCTCATTTTCAATAAATGCTATGGCATTTTT
TCCACGA
TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCATCTCTTGCAGGGCAGCCACATGAGTCA
TACGGCATACGGTGCCGTTTTCCCTCCTAATCCAAGCCAGCAGCCAACAT
GACCCTTTTAAAACAAATCCCATCACGTCCTTGTCTGATGTGAAGCTCTG
TGATGATTTCTCATTACATTCAGAGAACATTCAACCCGTTTGCCTGGTCT
CTGAGGCTTTCTCTGGCCTTCGTCAGACATGGCCTTGCATTAAGCATTAA
ATTGCATCCTCTATTACTTCATGTACAAATCTTAACTCTTGGTGCCTCAA
AAAAAAAAAAAAGACCTTCTTTGGAAACATGGTTGTTGCAGATACAATTA
AGGTCTCCACCAACGGTCACACTGTAGAAGGTGGGCACCCAAATGTAAGA
AGTGGACATCTGGACACATACAGCACATCCCATGATAGCAAGACACAGAT
CAGCGTTATTAGTCCAGCATAAGCTTGAATAAAAGTTTGTGACAAGGTGG
TTCCTCATATCTCTCATAAGGAGCTAGCCCTGTTGATTCTTTGTTCATAC
TGCCTAGTTTTTGGTAAGTATAAGTGTATACACTTCTGTAAAGCCCACAG
CTTGTGTTACTTGCTCTGCGCAGCCTGAACAAACGCATTACCACATCTCT
TCCCACTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_f11.b1 MSMg01no057_f11.b1 CHROMAT_FILE:
MSMg01no057_f11.b1 PHD_FILE: MSMg01no057_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:15 2005
         (446 letters)



>mm_chrX_6575000_6575845
          Length = 846

 Score =  760 bits (393), Expect = 0.0
 Identities = 429/441 (97%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcctttgatccttgaatctcctcctataaaacctacctacgaaaggctattctact 65
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcctttgatgattgaatctcctcctataaaacctacctacgaaaggctattctact 265

                                                                       
Query: 66  tcctgctatcacctcaagtgagagaccaagcctctgtgcaatattctagatccaaatgat 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tcctgctatcacctcaagtgagagaccaagcctctgtgcaatattctagatccaaatgat 325

                                                                       
Query: 126 ggcataaaaatcatggaaaatctgaaacttgttatcaaatgtgtagaaatatgggtatcc 185
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ggcataaaaattatggaaaatctgaaacttgttatcaaatgtgtagaaatatgggtatcc 385

                                                                       
Query: 186 tggatacctagtctatgtttgacatatgaagctggtgcgttactgtgtaactgagccctt 245
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 386 tggatacctagtctatgtttgacatatgaagctggtgtgttactgtgtaactgagcactt 445

                                                                       
Query: 246 tatttgagggatctgatgtgctcagtgtcttaattgaatcaaactgttcaatagtcaatt 305
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 446 tatttgagggatctgatgtgctcagtgtcagaattgaatcaaactgttcaatagtcaatt 505

                                                                       
Query: 306 gtgttagagaaataggaaattgctgctgtacaaaatgtattacctttggatgttaaaaaa 365
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 506 gtgttagagaaataggaaattgctgctgtacaaaatgtattagctttggatgttaaaaaa 565

                                                                       
Query: 366 aaacccccaactcttgaaagactccgagaggagtccctcgctcaggcctcaggacaatag 425
           |||   ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 566 aaaaaaccaactcttgaaagactccgagaggagcccctcgctcaggcctcaggacaatag 625

                                
Query: 426 cagacacccaagaactcacga 446
           |||||||||||||||||||||
Sbjct: 626 cagacacccaagaactcacga 646


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)