BAC Information

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BAC

Clone NameMSMg01-057G05
ChromosomeX (Build37)
Map Location 37,133,904 - 37,134,445
singlet/doubletsinglet
Overlap genenone
Upstream gene6030498E09Rik, LOC547171, LOC670539, LOC100039700, 1700085A12Rik, LOC100039715
Downstream geneEG636756, EG636766, EG245391, LOC100039769
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057G05.T7 (MSMg01no057_g05.b1)MSMg01-057G05.TJ (MSMg01no057_g05.g1)
ACCAG284556AG284557
length707788
length of high quality
(start - end)
602 (45 - 646)50 (76 - 125)
definitionCHROMAT_FILE: MSMg01no057_g05.b1 PHD_FILE: MSMg01no057_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:19 2005CHROMAT_FILE: MSMg01no057_g05.g1 PHD_FILE: MSMg01no057_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGA
ATTCCAGGACAGTCACTGCTACACAGAGAAACCCTGTCTCGAAAAATCAA
ACAAAAACAAAAACAATAGAAAACAAAACAAAAACCAACCAAACAAACAA
AAAACCAGAAGGACTGAAGCATCCACATTTTGGTCTTCCTTCTTCTTAGG
CTTCATATGGTCTGTGAATTGAATCTTCTGAATGTTTGGGCTAATATCCA
CTTATCTGTGAGCACATACCATGTGCAAAAATATCATTCTGAGTGAGGTA
ACTCAATCACAAAAGAGCACAAGAACTTTAAAAAAAATGACAAAACAGTA
AACTTAAGATATATACTAGGCTTCAGAGTTGCTTTACATGTCTTCTCAGT
TCACTAGTCCACTTATGGCATTGATGTTAATCATTTTTCAAATGAGGAAT
TTGAGACTAAAGAAGGCCAAATTAATTTTCTACTAGTTACAGTAGATGGA
TGCTCTCTTACTTCCCCCTCCTGTTCCCACCCCTCACTCTTGCTCTCTCT
GCTGTCCCCTTTCAACACTAAAGCTGTTTTCAGAGATGAATTCCATATAC
TGGAGCACAGATTGGTTTCTTGTTTTGTTTTGTTTTGTTTTTGCCTGTCT
CCAAAGTACTGGAATTAAAGCTGCCACCATGCCTAGATTATCATAGTCAT
TGTCTTA
CAATACAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCCAAAAATACACTGATGTTGAGAGATGTTAATGATG
GATGATTTTTACTTTTTTTTTTGCTTTAATGTAGTGCTAGGATTTGTAGT
GTCTAACTGCCTCCCCNTTTCTTCTCTTTACCTATCATTTCCCCTATCTA
TTAATATTAACCTCCTACCCAATCTCCTCATCATTTCCTCCTCTCAAACA
ATACCCTCCCCTATTCCATACATCCAATTAAAACCCTCCCTTTCTAACAC
CCCCAACCAAAAATAAATAAAAAAAAATAAAAAATTATTTTTTTATTTTC
TACAATACAACAACCACAAAACCCATATAAACACAACCCCCACACCCACA
AACCCCTAAAACAAAAATAAAACACACAAAAAAAAATAAACAAACCCACA
ACCCAAAAAAAAAAACACATAAAAAACAAAACAAAAAAAACCCAAAACCC
ACTCACTCCCCCCACCTACTACAACATAATATTCTACTCAATATATCCCA
TAAACACAAAAAACCCAAACACCAATACTAAATAATAAAAAAAAACACAA
CTCATAAATACACCAATCTACCATAACAACCTACATATAAACAAAAACAA
AAAAAAAAAAACCACAAAAAAAAAAAATATAAACACCACCTAACCCATAT
AACCTCCTAAAAACACACTAAAACTAACAAACCATAACACAAAATACCCC
CTAATAATCACTACAATCATAACCAAAACACTTTCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_g05.b1 MSMg01no057_g05.b1 CHROMAT_FILE:
MSMg01no057_g05.b1 PHD_FILE: MSMg01no057_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:19 2005
         (602 letters)



>mm_chrX_37133444_37134445
          Length = 1002

 Score = 1017 bits (526), Expect = 0.0
 Identities = 538/542 (99%)
 Strand = Plus / Minus

                                                                        
Query: 51   aatcaaacaaaaacaaaaacaatagaaaacaaaacaaaaaccaaccaaacaaacaaaaaa 110
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1002 aatcaaacaaaaacaaaaacaatagaaaacaaaacaaaaaccaaacaaacaaacaaaaaa 943

                                                                        
Query: 111  ccagaaggactgaagcatccacattttggtcttccttcttcttaggcttcatatggtctg 170
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942  ccagaaggactgaagcatccacattttggtcttccttcttcttaggcttcatatggtctg 883

                                                                        
Query: 171  tgaattgaatcttctgaatgtttgggctaatatccacttatctgtgagcacataccatgt 230
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882  tgaattgaatcttctgaatgtttgggctaatatccacttatctgtgagcacataccatgt 823

                                                                        
Query: 231  gcaaaaatatcattctgagtgaggtaactcaatcacaaaagagcacaagaactttaaaaa 290
            | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822  gtaaaaatatcatcctgagtgaggtaactcaatcacaaaagagcacaagaactttaaaaa 763

                                                                        
Query: 291  aaatgacaaaacagtaaacttaagatatatactaggcttcagagttgctttacatgtctt 350
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762  aaatgacaaaacagtaaacttaagatatatactaggcttcagagttgctttacatgtctt 703

                                                                        
Query: 351  ctcagttcactagtccacttatggcattgatgttaatcatttttcaaatgaggaatttga 410
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 702  ctcagttcactagtccacttatggtattgatgttaatcatttttcaaatgaggaatttga 643

                                                                        
Query: 411  gactaaagaaggccaaattaattttctactagttacagtagatggatgctctcttacttc 470
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642  gactaaagaaggccaaattaattttctactagttacagtagatggatgctctcttacttc 583

                                                                        
Query: 471  cccctcctgttcccacccctcactcttgctctctctgctgtcccctttcaacactaaagc 530
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582  cccctcctgttcccacccctcactcttgctctctctgctgtcccctttcaacactaaagc 523

                                                                        
Query: 531  tgttttcagagatgaattccatatactggagcacagattggtttcttgttttgttttgtt 590
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522  tgttttcagagatgaattccatatactggagcacagattggtttcttgttttgttttgtt 463

              
Query: 591  tt 592
            ||
Sbjct: 462  tt 461


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)