BAC Information

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BAC

Clone NameMSMg01-058F11
ChromosomeX (Build37)
Map Location 51,386,254 - 51,386,610
singlet/doubletsinglet
Overlap genenone
Upstream geneC430049B03Rik, Plac1, 4632404H22Rik, 4930432H15Rik, LOC385527, Mospd1, LOC100040609, Etd, Cxx1c, LOC100040644, Cxx1a, Cxx1b, AW822252, 4930502E18Rik, 1700013H16Rik, EG547172, Zfp36l3, Xlr, LOC100040719, LOC100040730, LOC100040260, LOC100040271, LOC100040765
Downstream geneLOC194788, LOC100040789, LOC666072, LOC100040317, LOC625476, LOC625508, LOC666096, LOC100040867, LOC100040894, LOC666122, LOC666135, LOC100038960, EG666151, EG666161
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058F11.T7 (MSMg01no058_f11.b1)MSMg01-058F11.TJ (MSMg01no058_f11.g1)
ACCAG285279AG285280
length715710
length of high quality
(start - end)
307 (47 - 353)482 (72 - 553)
definitionCHROMAT_FILE: MSMg01no058_f11.b1 PHD_FILE: MSMg01no058_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:34 2005CHROMAT_FILE: MSMg01no058_f11.g1 PHD_FILE: MSMg01no058_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:34 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTCCCCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT
TTCTGAAGTCCACCTTTTTGCGCTCTTTATATATGTTGGATATTAGTCCC
CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT
TTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA
TTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTT
CTGTTCAGGAATTTTTCTTCTGTGCCCATATCTTTAAGGCTTTTCCCCAC
TTTTTCTTTTTTTACCCCCCCCCCCCCTGGCTTTATGTGAAGTTCCTTGA
TCCACTTACATTTGACCTTAATACAAAGAGATAAGTGTGGATTGATTCGC
ATTCTTCTATACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAAT
GTTGTCTTTCTTCCACTGGACGTGTTTTAGCTCCCTTGTCGAAGATCATG
TGACCCTAGTTGTGTGGGTTCATTTCTGGGCCTTCAATTCCATTCCAATG
GTCTACTTGTCTTGTCTTCTATACCAGTTCCGTGCCAGTTTTTATTCCTA
TTGCTCCTGTATTAAAGTTTTCTAGGCTTGCATGGGCTGATTCATCTCAG
AATTTTTTTTTTATN
CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCCCCGAGGAATTCCTACTCAAAGTCATTGGAGACAAC
AGCAAATCTGTTTTGTCCGAATGGAGAATGGATGAGGATTTGTGCTCCAT
TAAAAAGGTCAATAAATTGACTAATTTGATTCCTGCCTGTATATTTGTGT
GTGCTTTGCACTTTTTTCTGCTTTGTGTTGTGCTCTGTGTTCTTGATTAT
TAACTCTAGGGTCCTTACCATACTTGCAAAATGAAATATTTCTCAGTTGG
AAAAGCTCTCATTTTTTTCTTCTGTATACAATATGATTCTTTAAAAAATA
AGTTTTTGATTCCTTTGCACTAATAGTAAGATCAAAATTTCTGGGAAGAC
ACTTTTCATTGAAAATACAGTTTTTCATTCAATAGATTCAGATTACTGTC
CCCCCAAATCCTTCTACAACCTCTCCACTTCTCGACCCACCCAAATTCAC
ACTTTTTCTTTCTCCCTTTATTAAAATAGAAACAGGCATCTAAGTAATAA
TGATACTATTAATGATCCTAATAATAATAATAATGACTATTAAGATACAA
AATAAACCAATGAACCATAACAGAACATACCCAAATTTAATGAAAAAGAG
TGCAAGAAAATGCACTAGAAATATACATGTCATATCCAGAGACATATATG
TTCACCAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_f11.g1 MSMg01no058_f11.g1 CHROMAT_FILE:
MSMg01no058_f11.g1 PHD_FILE: MSMg01no058_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:34 2005
         (482 letters)



>mm_chrX_51386054_51386935
          Length = 882

 Score =  244 bits (126), Expect = 1e-68
 Identities = 304/368 (82%), Gaps = 17/368 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattcctactcaaagtcattggagacaacagcaaatctgttttg-tc-cgaatggagaat 58
           ||||||||||| ||||||| |||| ||| ||  | ||  ||||| || |  |||||||||
Sbjct: 201 aattcctactctaagtcatcggagtcaatagggattccattttgttctc--atggagaat 258

                                                                       
Query: 59  ggatgaggatttgtgctccattaaaaaggtcaataaattgactaatttgattcctgcctg 118
           ||  |||||||||| ||||||||||||||||  || ||| ||||||||||| ||||||||
Sbjct: 259 gg-ggaggatttgttctccattaaaaaggtccttacattcactaatttgatgcctgcctg 317

                                                                       
Query: 119 tatatttgtgtgtgctttgcacttttttctgctttgtgttgtgctctgtgttcttgatta 178
           | | |||| |||| ||||| |||||| |||||| ||||||||| ||||||||||||||||
Sbjct: 318 tctttttgagtgtcctttgtacttttatctgctgtgtgttgtgttctgtgttcttgatta 377

                                                                       
Query: 179 ttaactctagggtccttaccatacttgcaaaatgaaa-tatttctcagttggaaaagctc 237
           |||||||||||||| |||||||| |  |||||||||| |||| ||||||| ||||| || 
Sbjct: 378 ttaactctagggtctttaccataatcacaaaatgaaaatatt-ctcagtttgaaaacctt 436

                                                                       
Query: 238 tcatttttttcttctgtatacaatatgattcttt--aaaaaataagtttttgattccttt 295
           |||| ||| || ||||||||||||||||||||||  ||||||| ||||| ||| | ||||
Sbjct: 437 tcatatttgtcctctgtatacaatatgattcttttaaaaaaatcagtttatgagtacttt 496

                                                                       
Query: 296 gcactaatagtaagatcaaaatttctgggaagacacttttcattgaaaatacagt-tttt 354
           | || || |      || |||||| |||||| | |||||| ||||||||| || | ||||
Sbjct: 497 gtaccaaca------tctaaatttttgggaaaatactttttattgaaaatgca-tctttt 549

                   
Query: 355 cattcaat 362
           ||||||||
Sbjct: 550 cattcaat 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)