BAC Information

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BAC

Clone NameMSMg01-058G20
ChromosomeX (Build37)
Map Location 161,183,860 - 161,184,051
singlet/doubletsinglet
Overlap genenone
Upstream gene1700045I19Rik, Ap1s2, Zrsr2, Car5b, Siah1b, Tmem27, Ace2, Bmx, Pir, Figf, Piga, Asb11, Asb9
Downstream geneMospd2, Fancb, LOC627045, Glra2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058G20.T7 (MSMg01no058_g20.b1)MSMg01-058G20.TJ (MSMg01no058_g20.g1)
ACCAG285345AG285346
length712717
length of high quality
(start - end)
194 (126 - 319)243 (76 - 318)
definitionCHROMAT_FILE: MSMg01no058_g20.b1 PHD_FILE: MSMg01no058_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:40 2005CHROMAT_FILE: MSMg01no058_g20.g1 PHD_FILE: MSMg01no058_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGTACGGAGCCGCGG
AATTCTAATGTTCCCACAAAAGGGCAAAAGCAAAGCCTCTGGGTTACAGT
GAACATGAGAGCATTGGTTAACCCATGGGAGCATAAGCTACTACATTTTT
GTAAGTTGATGTCTTCTGTCTCCTGCTGGCAGCAGGAGTTGCTCCCTGCT
CAACATCTGGAAAGCATCCCAGTCTGTGCATTTGTTCTTTCAGTTTCCCC
TGTAAGGAGATTGACTATGAGGAACCGTTTCTCCAGTGTGAAACCAAAGG
GGGCCACATGGATTGTGTTGTTTTTGCAAGTGAATGTGATGAGGGCTTAG
CCTAAGCATTTATGCAACACTTTATCAACACTAAAATAATTGAAATGTAA
TGATGAACAGGTTGCCTTGTCATCCTATCCATGTTTCCCTACCTTCCCTT
ATATTCTTGTTTGAGGGTCATCAGAACATTGAGTCCTTATCTGTGACAAC
ATGGCCCAGGATGAGTGTCAGCTTCTCTTGACCAAAGCTAGTCATATACC
ACATACCACCTCTGATTTTACAGCCTATTTTCAGAAATCTCTAAAGCCCT
GCCATTTCTCTCCTACATATCCCCTTTACCCCTGGTCTTTACAAAATACT
CTGATGAATTGTATTCCTAAAAAAATGACTGTAATGCTTAAATTATATGA
ATTTTAATTTTN
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAAAAAAATTCCTGATCTTTCCAAAACTTTTATCAT
GAATGGGTGTTGGATTTTGCCCCCTGCTTTTTCTGCATCTAACGAGATGA
TCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATG
GATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTG
GTCAGGATGGATGATTTCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAA
TTTTATTAAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAG
TTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAAAGTAATAGT
GGCTTCATAAAATGAGTTGGTAAGAGTACCTTCTACTTCTATCTTGTGAA
ATAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAAC
TCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGTAGACTATT
AATAACTGCTTCTATTTCTCTAGGGGATATGGGCACTGCTTAGAAGGTCA
ACTTTGATCTTGATTCAACTTTGGTACCCTGGTATCTGTCCAAAAATTTG
TCCCATTTCCGTCTATGTTTTTCCCGTTTTCGTTTGAATAAAAGCTTTTT
TTCAGACAGGATCTCGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_g20.b1 MSMg01no058_g20.b1 CHROMAT_FILE:
MSMg01no058_g20.b1 PHD_FILE: MSMg01no058_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:40 2005
         (194 letters)



>mm_chrX_161183660_161184253
          Length = 594

 Score =  348 bits (180), Expect = e-100
 Identities = 189/192 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggagcataagctactacatttttgtaagttgatgtcttctgtctcctgctggcagcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggagcataagctactacatttttgtaagttgatgtcttctgtctcctgctggcagcag 260

                                                                       
Query: 61  gagttgctccctgctcaacatctggaaagcatcccagtctgtgcatttgttctttcagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagttgctccctgctcaacatctggaaagcatcccagtctgtgcatttgttctttcagtt 320

                                                                       
Query: 121 tcccctgtaaggagattgactatgaggaaccgtttctccagtgtgaaaccaaagggggcc 180
           ||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 tcctctggaaggagattgactatgaggaaccgtttctccattgtgaaaccaaagggggcc 380

                       
Query: 181 acatggattgtg 192
           ||||||||||||
Sbjct: 381 acatggattgtg 392


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)