BAC Information

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BAC

Clone NameMSMg01-060L03
ChromosomeX (Build37)
Map Location 67,145,859 - 67,146,504
singlet/doubletsinglet
Overlap genenone
Upstream geneEG627927, LOC666882, LOC671950, LOC100040255, Aff2, EG666577
Downstream gene1700020N15Rik, Ids, 1110012L19Rik, 4930567H17Rik, LOC100040304, LOC628002, LOC628012, BC023829, EG547447, LOC666981, LOC100040409, LOC628053, LOC100040432, EG280121, LOC666993
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060L03.T7 (MSMg01no060_l03.b1)MSMg01-060L03.TJ (MSMg01no060_l03.g1)
ACCAG287079AG287080
length711721
length of high quality
(start - end)
652 (39 - 690)31 (143 - 173)
definitionCHROMAT_FILE: MSMg01no060_l03.b1 PHD_FILE: MSMg01no060_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:29 2005CHROMAT_FILE: MSMg01no060_l03.g1 PHD_FILE: MSMg01no060_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
GTTTCTCGCCAATCAGGCTGATTTTCTCAGATGGCCTTTTGCAACAAGGG
ACTGAGGGACTGAGTCCACAGGAGCTGGTCTGAAACTGTTGTGTTTGAAA
TGTCACTCTTGCCCACGGGAGGGAAGGGTATCAATCTGGCATGGGAGGGA
ACTGTAGAATTTTGGAATGAAACAAAGTGATGAGCTCAATGTTTGTATCA
GGCAAGTGAGCCTTGTGGGGAGTTCAGAGCAGAGCTACTAAATGCAAGTC
TGCAAATGTAGGGGCAGATCTTCACACTTTCTTTCCATCTATCCTGTCCT
ATTTGCATTCATCACTGCCTTGCAACCTACATGTATACCATGCACACAAG
CAACTTGTCCACGCTTGTACTTCACTTTGTTTATGTATAAAAGGATATGT
GTTCTTTAAATGCTGTTTCTTCAGCACTGATAAACTGGGACTCTGGGACA
TGTGTATATCTAGTCAGGCTCATGCCTACATCTTAGCCAGGAATACAAGG
GAACCATCTTCACCTCGCACCTTTTGATAGACCTCCTAAGTTCAAACATT
CACAAAGTCCAATGGCCTAGGCACACCTTTTCCAGTGTTTTCTGGCTACA
TCATAACATCATAGTCTCTTCCAGTGGAGTTTGTTGAATGTTGTGTTCGA
TTTGTTTGTTT
CCTTAAATTAANCCAACGATGAAGGGGAGGCTGGGGGCGCCCGGATTCAG
ACCAAGGNGAANNNAACAGGTAACGGCACCGCACGGNACAGNNANCANAN
AAAGAAGNNNCCNCNNNCATTTTACGCCCCCCCAGGAAGAAAACATTTAT
TGTTTATAAGCTACTTAATATGCGGGATTCTGCTATAGCAAATCAAAACT
ATTAACATATAAGATTTTTTACTTTTTTTAACCTAATGGGGTCCTATGTC
TATATAGATGACTGTGATTTTCCTTGTTTATGCCATTGCTAGGTGTATTA
CATAAATTCGAAGTGAACTGTTTTTTCCTACAACGCACCATTATTGGCTG
TCGCTCGCAACTTTTTCTCTACGCCGCCACACCAGGGTTACTAGCATCCC
TCCGCAATCCCCCCAGCTACACCCCTCACGGAAGAGAAAAAAACTACTCT
CCCTCAGACATGACACTACACTTGAAGACTGAAATACCTCACCCCCTTAC
TCTTCACGTCAGTACACCGTCACCACAACCGCCCAAAGTCACTGAACCAG
ACCCTTGGAAACAANCATCCCTTAGGAATATTGGCGTTTTACAAATCCCC
ACATAAAAAAAATTACGGCACAAATCGCCCCTAACTTGCATTTCCCCCAA
CCCGAATCGGACGGAACACCCGAACCAACCCCCGCTCGCGGGGGCATACG
GCAATCCCACCAACGAAGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_l03.b1 MSMg01no060_l03.b1 CHROMAT_FILE:
MSMg01no060_l03.b1 PHD_FILE: MSMg01no060_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:29 2005
         (652 letters)



>mm_chrX_67145655_67146704
          Length = 1050

 Score = 1210 bits (626), Expect = 0.0
 Identities = 642/648 (99%), Gaps = 2/648 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagtttctcgccaatcaggctgattttctcagatggccttttgcaacaagggac 64
           |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagtttctgg--aatcaggctgattttctcagatggccttttgcaacaagggac 262

                                                                       
Query: 65  tgagggactgagtccacaggagctggtctgaaactgttgtgtttgaaatgtcactcttgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgagggactgagtccacaggagctggtctgaaactgttgtgtttgaaatgtcactcttgc 322

                                                                       
Query: 125 ccacgggagggaagggtatcaatctggcatgggagggaactgtagaattttggaatgaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ccacgggagggaagggtatcaatctggcatgggagggaactgtagaattttggaatgaaa 382

                                                                       
Query: 185 caaagtgatgagctcaatgtttgtatcaggcaagtgagccttgtggggagttcagagcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 caaagtgatgagctcaatgtttgtatcaggcaagtgagccttgtggggagttcagagcag 442

                                                                       
Query: 245 agctactaaatgcaagtctgcaaatgtaggggcagatcttcacactttctttccatctat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 agctactaaatgcaagtctgcaaatgtaggggcagatcttcacactttctttccatctat 502

                                                                       
Query: 305 cctgtcctatttgcattcatcactgccttgcaacctacatgtataccatgcacacaagca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cctgtcctatttgcattcatcactgccttgcaacctacatgtataccatgcacacaagca 562

                                                                       
Query: 365 acttgtccacgcttgtacttcactttgtttatgtataaaaggatatgtgttctttaaatg 424
           ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 acttgtccatgtttgtacttcactttgtttatgtataaaaggatatgtgttctttaaatg 622

                                                                       
Query: 425 ctgtttcttcagcactgataaactgggactctgggacatgtgtatatctagtcaggctca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctgtttcttcagcactgataaactgggactctgggacatgtgtatatctagtcaggctca 682

                                                                       
Query: 485 tgcctacatcttagccaggaatacaagggaaccatcttcacctcgcaccttttgatagac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tgcctacatcttagccaggaatacaagggaaccatcttcacctcgcaccttttgatagac 742

                                                                       
Query: 545 ctcctaagttcaaacattcacaaagtccaatggcctaggcacaccttttccagtgttttc 604
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 743 ctcctaagttcaaacattcacaaagtccaatggcctaggcacaacttttccagtgttttc 802

                                                           
Query: 605 tggctacatcataacatcatagtctcttccagtggagtttgttgaatg 652
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tggctacatcataacatcatagtctcttccagtggagtttgttgaatg 850


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1050
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1040
Effective search space:   667680
Effective search space used:   667680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)