BAC Information

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BAC

Clone NameMSMg01-061I19
ChromosomeX (Build37)
Map Location 161,183,864 - 161,184,053
singlet/doubletsinglet
Overlap genenone
Upstream gene1700045I19Rik, Ap1s2, Zrsr2, Car5b, Siah1b, Tmem27, Ace2, Bmx, Pir, Figf, Piga, Asb11, Asb9
Downstream geneMospd2, Fancb, LOC627045, Glra2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061I19.T7 (MSMg01no061_i19.b1)MSMg01-061I19.TJ (MSMg01no061_i19.g1)
ACCAG287733AG287734
length719715
length of high quality
(start - end)
192 (125 - 316)480 (71 - 550)
definitionCHROMAT_FILE: MSMg01no061_i19.b1 PHD_FILE: MSMg01no061_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:33 2005CHROMAT_FILE: MSMg01no061_i19.g1 PHD_FILE: MSMg01no061_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGNGACCCCGCGGAAT
TCTAAGGNAAATGGCANGAGCAAAAGCAAAGCCTCTGGGTTACAGCGAAC
ATGAGAGCATTGGTTAAAATATCCCAGCATAAGCTACTACATTTTTGTAA
GTTGATGTCTTCTGTCTCCTGCTGGCAGCAGGAGTTGCTCCCTGCTCAAC
ATCTGGAAAGCATCCCAGTCTGTGCATTTGTTCTTTCAGTTTCCCCTGGA
ATGTATATTGACTATGAGGAACCGTTTCTCCAGTGTGAAACCAAAGGGGG
CCACATGGATTGTGCTGTCTTCGTAATTTAATGNGACGAGGGCTTAGCCT
AAGCATTTAGGCTATACTTCACCCCCACTAAGATAATTGAAATGTAATGA
TGAACAGGTTGTCTTGTCATCCTATCCATGTTTCCCTACCTTCCCTTATA
TTCTTGTTTGAGGGTCAGCAGAACATTGAGTCCTTATCTGTGAGAACATG
GCACAGGATGAGCGTCAGCTTCTCTTGAGCAAAAGTCAGTCAGAGACCAC
AGACAACCTCTGAATTACAAGTCTATTTTCAGAAATCTCTAAAGCCCTGC
CATTTCTCTCCTACATATCCCTTTTACACCTGACTTTATAATATACCCCG
TGAATTGTTTTTCTAACAAATGACTGAATGCATACCTTACTGAAGCTGAT
TTACCAATCATATGTTTAG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCATGAATG
GGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCATG
TGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTT
TCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAG
GATGGATGATTTCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTA
TTAAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTC
TATCTTTGTTGGATCTTTCTGTGCTTTAGGTATCAGAGTAATAGTGGCTT
CATAAAATGAGTTGGCCACAGTACCTTCTACTTCTATCTTGTGAAATAGT
TTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGC
ACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTATTAATAA
CTGCTTTCATTTCTTTAGGGGATATGGGACTGTTTATAAGGTCAACTTGA
TCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCACTTC
GTCAAGTTTTTCCAGTTTTGCTGATCATTAGCTTTTGTACAATTTCCTGA
CGCTTGCTTTTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_i19.b1 MSMg01no061_i19.b1 CHROMAT_FILE:
MSMg01no061_i19.b1 PHD_FILE: MSMg01no061_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:33 2005
         (192 letters)



>mm_chrX_161183663_161184253
          Length = 591

 Score =  331 bits (171), Expect = 2e-95
 Identities = 186/191 (97%), Gaps = 1/191 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   agcataagctactacatttttgtaagttgatgtcttctgtctcctgctggcagcaggagt 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 agcataagctactacatttttgtaagttgatgtcttctgtctcctgctggcagcaggagt 261

                                                                       
Query: 62  tgctccctgctcaacatctggaaagcatcccagtctgtgcatttgttctttcagtttccc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 262 tgctccctgctcaacatctggaaagcatcccagtctgtgcatttgttctttcagtttcct 321

                                                                       
Query: 122 ctggaatgtatattgactatgaggaaccgtttctccagtgtgaaaccaaagggggccaca 181
           |||||| | | |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 322 ctggaagg-agattgactatgaggaaccgtttctccattgtgaaaccaaagggggccaca 380

                      
Query: 182 tggattgtgct 192
           |||||||||||
Sbjct: 381 tggattgtgct 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 591
Length adjustment: 8
Effective length of query: 184
Effective length of database: 583
Effective search space:   107272
Effective search space used:   107272
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)