Query= MSMg01no064_d01.b1 MSMg01no064_d01.b1 CHROMAT_FILE:
MSMg01no064_d01.b1 PHD_FILE: MSMg01no064_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:56 2005
(417 letters)
>mm_chrX_84896838_84897654
Length = 817
Score = 766 bits (396), Expect = 0.0
Identities = 408/412 (99%)
Strand = Plus / Plus
Query: 5 gaattcctcatgaattctgaatgaagttaaggttacccacactcatgttacttccttatt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcatgaattctgaatgaagttaaggttacccacactcatgttacttccttatt 264
Query: 65 tttaacatattatagctttataagaccaaaatatgtttttaaggagaacagaataaaata 124
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 265 tttaacatattatagctttataagataaaaatatgtttttaaggagaacagaataaaata 324
Query: 125 agtaggaactctataatatctgcactatttctgtgttcaagcaaaagtaatacaaataat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtaggaactctataatatctgcactatttctgtgttcaagcaaaagtaatacaaataat 384
Query: 185 acagtcttgaagagtaaactctattaaatcattgctatacgtcagatactacatttccag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 385 acagtcttgaagagtaaactctattaaatcattgctatacgtcagatactacagttccag 444
Query: 245 tcacataaatgaagttaaatagatattaccttgtaggatcagcttttgtttgttagatat 304
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 445 tcacataaatgaagttaaatagatattaccttgtaggatcagtttttgtttgttagatat 504
Query: 305 tgtgttcctcatgatagagaagaaaagattttaaattaattataaggtgttacagcgcaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgtgttcctcatgatagagaagaaaagattttaaattaattataaggtgttacagcgcaa 564
Query: 365 ggctgggcagttgttatgaaattgaaaaactaatggtcaaatgattatagtc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggctgggcagttgttatgaaattgaaaaactaatggtcaaatgattatagtc 616
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space: 329664
Effective search space used: 329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no064_d01.g1 MSMg01no064_d01.g1 CHROMAT_FILE:
MSMg01no064_d01.g1 PHD_FILE: MSMg01no064_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:56 2005
(628 letters)
>mm_chrX_84990280_84991308
Length = 1029
Score = 988 bits (511), Expect = 0.0
Identities = 523/527 (99%), Gaps = 1/527 (0%)
Strand = Plus / Minus
Query: 1 tccgttttagacatttctcacccatttgtactttttcaaatacctaatcagttatatggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tccgttttagacatttctcacccatttgtactttttcaaatacctaatcagttatatggg 468
Query: 61 tcaatatttgtag-atatgagaattttaatgtcaaagtcaattaaggtatctgaaaattt 119
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tcaatatttgtagaaaatgagaattttaatgtcaaagtcaattaaggtatctgaaaattt 408
Query: 120 tcatagatatcttactgcatggataaatagtttagctaaccatgaaagaaaagtggtttc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tcatagatatcttactgcatggataaatagtttagctaaccatgaaagaaaagtggtttc 348
Query: 180 tccttatccagggaattataaaggcccatatattgtactttttattctttttgtggtgtt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tccttatccagggaattataaaggcccatatattgtactttttattctttttgtggtgtt 288
Query: 240 attttaatttcaattgttctttacattataaattcaaaatatttgatactaattcaacag 299
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 287 attttaatttcaattgttctttacattataaattcaaaatatttgagactaattcaacag 228
Query: 300 atatgtaatatctaaatgtataaacagttttaataattttaacatacaaataattatatt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 atatgtaatatctaaatgtataaacagttttaataattttaacatacaaataattatatt 168
Query: 360 ctattctagtattaaaatatataactaggaaatattaaccagtgaacagtcttggatatg 419
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 167 ctattctagtattaaaatatataactaggaaatactaaccagtgaacagtcttggatatg 108
Query: 420 tgctagatgaagaatttatagttataatttgatgtcattcagccaatatttacattagta 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 tgctagatgaagaatttatagttataatttgatgtcattcagccaatatttacattagta 48
Query: 480 cagtccttctctagagattgacatttttaaagaccaatgtttgtata 526
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47 cagtccttctctagagattgacatttttaaagaccaatgtttgtata 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1029
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1019
Effective search space: 629742
Effective search space used: 629742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
