BAC Information

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BAC

Clone NameMSMg01-064M14
ChromosomeX (Build37)
Map Location 9,271,237 - 9,271,640
singlet/doubletsinglet
Overlap genenone
Upstream geneSsx9, Ssxb5, LOC625480, EG436188, B630019K06Rik, LOC100009698, LOC436189, LOC673817, LOC331380, EG434726, LOC100043940, EG434727, LOC436190, LOC100042782, EG668980, Fthl17, LOC100043942, EG434728, LOC100043943, LOC385316, EG434729, LOC100043944, LOC628008, 4930402K13Rik, EG436193, Lancl3, Xk, 1700012L04Rik, EG628040, LOC100042834, LOC100042839, Rp23-423l11.5, Cybb, EG333452, LOC100042867, Dynlt3
Downstream gene1700054O13Rik, 4930557A04Rik, Sytl5, LOC436194, Srpx, Rpgr, Otc, 4933416E14Rik, Tspan7, EG546265, LOC633354, LOC633361
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064M14.T7 (MSMg01no064_m14.b1)MSMg01-064M14.TJ (MSMg01no064_m14.g1)
ACCAG290159AG290160
length1,2581,219
length of high quality
(start - end)
411 (42 - 452)382 (70 - 451)
definitionCHROMAT_FILE: MSMg01no064_m14.b1 PHD_FILE: MSMg01no064_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:00 2005CHROMAT_FILE: MSMg01no064_m14.g1 PHD_FILE: MSMg01no064_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGGCATTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGGGACCATGTTGAGAGACCAAGAATGTCTTGGATCAATCATCACCAGA
TAGCTAGCCAGCTGACATCAAATGTATGACCCCAGCAGAGCCCAGAACTA
ATAGCAAAACCCAGATTAACCAGTCAAACCAAGAGCTTTTTTTCAAAGAA
TTTACAGATGGTAGTTACTAGAGGCATGATATTTTAGGGTTATTATAAAA
CAATAAATAATTGATATGTCATTTATTGTTTTTCTCTCAAACCTGTTACC
TAGTTTTGTTTGGTGCTTTCCTGATTTCTTTTCCTCTTCAGGTTTTAAGT
ATATGCAACAGGACTGGTTTTCACTATTTATGAAAGCTGTGGCAAGACAT
ACTGCTTCTAAGTTTCTATCTCCATTTGCTTTGTTTTCTTGAAATGTCAA
TTTTTTGTTTAGCCCCCCCTATAACAGACACTCTGCGTTATAAAAAAAAT
TGTTGAACTTTTCTTTCTGATACCTCTTTACTAGAATATCTAGAAACATA
AAACCTGAATTTCTCCTATGCCACAAGGGAGGTGATGTGCATGGCTCTGT
CAAAAGATGTTAGGGAAGCCCTTGTGAAAGGCTCCCTCCCCTTTCTCATT
AAGAGAAAGCCCTGGACGCCTCCTTACTTATCCCTGCTCAGAACACAGGA
GGGATGATGCCCTTGTTCAGGAGCTGATAATGCAAAAAGGGGGGGAGGAG
GAGAAGAAAAAGGAAGAAGACGATTATTAATATTATCTATTATATTTATA
TGTATTTCCTCCTCATTCTTTATATTTTATATCTTACTCCTCTTATTCGT
TTCTCTCCACTTCTTTCACTCTTTTTTTATTATTTTTTCCTTTTCTTACT
AATTCACACTCTCTCATCTCTATCCATACAGATAACTCTTTCTCTTTTTT
CTTCTTCCTTTTTCTTTCATTTCATTTCTGTCTCTTTCCTTCTCCACCTT
TACATCCCATCTTTTTTCACCTCTTCTCCCTCTCTCTCTTTTGTCCATCT
CTGTTTTTTTTAAACTATTCTTTCTATCTTCTCTTACCTTTTTCTTCTTT
GTTCTATCATCTTATCTGTTTCTCTTATCATTCTATGCAGTATTTCCTCA
TTTTCTCTCTTCTTATTACTTGTCAAATTTATTATCTTCTCTTCCTCTCC
TCTATATTATGTTTTCTTCTTCTCTCTCTTCTCNTACTCNTTCCTCTCTC
ATACTCAC
NNGGGAAGACGTGAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTGAGTACTTTCTTATGCCACCTCTAGGACA
AGAGAGGGTGGTGGTCATAGCTGGTACCCCCAGTTTCCATCAGTCACCTG
AGCATCAGGCAGAGCTAACTGCTCTTTAGAAAGCACCCTGAGCATGTGCG
GACAGGGAAGGAGAAAGATGCCACTGTTCAGAGGAAACAAGGAATGGTCA
AGATGACATGAAAAGAATGTGGTACCCTAGGACCTGAAACTAAACTCTTC
TGATTCTGCTGTGAAAGCTGACTGGACAGCCTCTGAGAAGTTCTGTCTAA
AAGGCCAGCAGTGGCAGAAGCCTAGGAGCTGATGAAAAGTGAACACCCCA
AATGTGGACACTTAGAGGCAGGGGCCCCAGTGCTAAGTTGGAGCAGCTCC
TGTTTTTTACCCCCCCCCATATATGTTCTGTGAAACATTAAAAAAAGAGT
TTATTCATAATACATGAAAACTCTCTAAAACCCAGGCTCAACCTCTGATG
ACAGGTCCTGCACTGTTTTATGACGTATCCTATCACTGAAAACCCAGAGC
TCCCTTCTGAGAACAGCACTGAAGATGTTCATAAATAAGTTCATTAATGT
TCTGTAACTATTTCAACCTGCTTGAATTACAAGGCAGTTAGACAGTAGCA
TTTCCCCACTACTGTTATTTAGATGACCAGTGTGCCTAAGACAGAGGGGG
CATTCTAGCACTCAAAGACAGAGGTGGTCAGAACTCTGTGAGTTCAAGGC
CAGCCTGTTCTATGGAGTGAGTCAGGACAGTCAGGACTGTGTAAAGAGAC
CCTGTCTCAAACCCAAAAAGAGGAATTGTTGGAGAATGAAAAATTAGGAT
AATACTTGGTAAAAACATAAATTGTCCCGTTATATATATATTCCTTTCTC
TTCTCAGTCCCTTTTTCCCTCAAATTCTTTATATTAACCTTTTTTTAAGG
GGCTCAAATTCTTTTATTTTTTAACTGTTTATCTATCCTTATCTTTTTTT
TTCCTATATTTTTTTACTTCAATTTCTTTTTTTTTTTATCCTTTATTTTC
TTTTCTTCCCCCTTTTTATTTCTTTTTCTGTCTCTTCTTCCTTCCTTTTT
CCTTTTCCTTCTTTGATTTTTTCTACATCCTCCTTCATTTTCTATTCTCT
TTTTCTCTCTTTTTTTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_m14.b1 MSMg01no064_m14.b1 CHROMAT_FILE:
MSMg01no064_m14.b1 PHD_FILE: MSMg01no064_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:00 2005
         (411 letters)



>mm_chrX_9271030_9271840
          Length = 811

 Score =  735 bits (380), Expect = 0.0
 Identities = 398/404 (98%)
 Strand = Plus / Minus

                                                                       
Query: 8   ttctgggaccatgttgagagaccaagaatgtcttggatcaatcatcaccagatagctagc 67
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 611 ttctgggaccatgttgagagaccaagaatgtcttggatcaaccatcaccagatagctagc 552

                                                                       
Query: 68  cagctgacatcaaatgtatgaccccagcagagcccagaactaatagcaaaacccagatta 127
           ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 551 cagctgacatcaaatgtatgacatcagcagagcccagaactaatagcaaaacccagatta 492

                                                                       
Query: 128 accagtcaaaccaagagctttttttcaaagaatttacagatggtagttactagaggcatg 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 accagtcaaaccaagagctttttttcaaagaatttacagatggtagttactagaggcatg 432

                                                                       
Query: 188 atattttagggttattataaaacaataaataattgatatgtcatttattgtttttctctc 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 431 atattttagggttattataaaacaataaataattgatatgtcatttattgtttttctctt 372

                                                                       
Query: 248 aaacctgttacctagttttgtttggtgctttcctgatttcttttcctcttcaggttttaa 307
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gaacctgttacctagttttgtttggtgctttcctgatttcttttcctcttcaggttttaa 312

                                                                       
Query: 308 gtatatgcaacaggactggttttcactatttatgaaagctgtggcaagacatactgcttc 367
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gtatatgcaacaggactagttttcactatttatgaaagctgtggcaagacatactgcttc 252

                                                       
Query: 368 taagtttctatctccatttgctttgttttcttgaaatgtcaatt 411
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 taagtttctatctccatttgctttgttttcttgaaatgtcaatt 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)