BAC Information

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BAC

Clone NameMSMg01-064P22
ChromosomeX (Build37)
Map Location 139,071,971 - 139,072,285
singlet/doubletsinglet
Overlap genenone
Upstream geneCol4a5, Irs4, LOC633596, EG666488, LOC622901, EG436234, EG622956, Gucy2f, LOC623006, LOC100039023, Nxt2, EG434858, Kcne1l, Acsl4, Ppia-psx_1100.1, EG633736, EG245651, LOC100039086, EG436235
Downstream geneTmem164, Ammecr1, Rgag1, LOC209541, Chrdl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064P22.T7 (MSMg01no064_p22.b1)MSMg01-064P22.TJ (MSMg01no064_p22.g1)
ACCAG290310AG290311
length760747
length of high quality
(start - end)
321 (46 - 366)---
definitionCHROMAT_FILE: MSMg01no064_p22.b1 PHD_FILE: MSMg01no064_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:22 2005CHROMAT_FILE: MSMg01no064_p22.g1 PHD_FILE: MSMg01no064_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAAAATGGCACTTGGATCTTCCTTGTATCTTTGCTTCTTTTCTGA
GAATTTCTGATTTCTAAACCTGCTGTACTCATGGTTTTTATTGTTTATTG
AAGCGTATGACAAATGTCGCAAACTCTATATCAGATAATTCTGAGATATG
GCACCTGTTTCTTGTTAAATCTTCAGAGTCAGAATTTTCTTTGTTTATGT
TGGAGACTGTAATTTAATTATGTTTTCCCCAGCCCTTTCCTCCCTTCAAG
CCCTCCCATATTCCCCCTGCTCTCCTTCAAATTCATGACCTCATTTTTTG
AGTAATTCTTATTGTATTTTTATATGCGCCACCCCACACATATATGTGTA
TAAATATAACCTGTTAACCGCGCATAATGTTATTTGTGTCTGATTTTAGG
GCTAACAACCAATTGGTGTGCTCGTCCCTGCAGAAGAGCACCTCTTCTAC
TTTCAGCTTTTCTAGGTTGCCTATAGTTCTTTGTGTGGGGTTGTGAACCT
CAATAGACTTTGGCATGTCTATTGTTATCATCATTACACGGCCCGTGTTT
GGATGGTCATGTTGGTGTGACTTCTGATGTTATGAGGATATATAATCTCA
CAGCAAACTCCCTGGTCTTCTGGCTCCTAAAACCTTTCCACTCCCTCCTC
TCCATTGTTTCCTGAAACTCAGGCCCACGAGTGTTTTGTAGGTGATATAT
CTATCACCTT
ATCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTAAACTTGAGGGACATATAT
CATCATGAACCAATATTGCAAAACTGTGTGATGGGGGGATGAAAAAGATA
AAATTGGTTTAGGAGAATAATTTGTCAACTGTTATTAAAAAAAAAACTTG
GGGCTGGGGAGATGGCTCAGGGGGTAAAAGCACCCAACTGCTCTTCCGAA
GGTCTGGAGTTCAAATCCCAGCAACCACATGGGGGTTCACAACCATCCAT
AACAAGATCTGACTCCCTCTTCTGGAGTGTCTGAAAACAGCTACGGGGTA
CTTACATATAATAATTTTATTATTTTTCCCCCCCCCCTTCAAATGGCCTT
CTCCCCTCAAGAAAGGAAGGCCCCCCCAAACCAAATAACAAAAAATTTTT
TAGAAGATTTATTAATTTTTTATTTAAGGGGAAGGAATATTCTGCCTATG
GGGATATATGTGCACAATGTGAGTGCCTGGTGCCTGTGAAGACCAAAAAA
TGGCATCAGTAGTTGCCTTGGGCCTAGAGTATTGGTTGTGAGCCCCATAT
GGCTGCTCGAAACCGACCCCTGGTTTTTTGCCAAATCCGCACGCCGTCCC
TACCCGCCGAACCTCTTTTCCTTTCTTCCCCCCATATTTCCGCAGCTACT
CTCCATTCCCTCCCGTACCCTCCCCTCCCCATTCGGCTTTTCCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_p22.b1 MSMg01no064_p22.b1 CHROMAT_FILE:
MSMg01no064_p22.b1 PHD_FILE: MSMg01no064_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:22 2005
         (321 letters)



>mm_chrX_139071767_139072487
          Length = 721

 Score =  601 bits (311), Expect = e-176
 Identities = 314/315 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaaaatggcacttggatcttccttgtatctttgcttcttttctgagaatttctg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaaaatggcacttggatcttccttgtatctttgcttcttttctgagaatttctg 264

                                                                       
Query: 65  atttctaaacctgctgtactcatggtttttattgtttattgaagcgtatgacaaatgtcg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atttctaaacctgctgtactcatggtttttattgtttattgaagcgtatgacaaatgtcg 324

                                                                       
Query: 125 caaactctatatcagataattctgagatatggcacctgtttcttgttaaatcttcagagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caaactctatatcagataattctgagatatggcacctgtttcttgttaaatcttcagagt 384

                                                                       
Query: 185 cagaattttctttgtttatgttggagactgtaatttaattatgttttccccagccctttc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagaattttctttgtttatgttggagactgtaatttaattatgttttccccagccctttc 444

                                                                       
Query: 245 ctcccttcaagccctcccatattccccctgctctccttcaaattcatgacctcatttttt 304
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctcccttcaagccctcccacattccccctgctctccttcaaattcatgacctcatttttt 504

                          
Query: 305 gagtaattcttattg 319
           |||||||||||||||
Sbjct: 505 gagtaattcttattg 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)