BAC Information

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BAC

Clone NameMSMg01-065C24
ChromosomeX (Build37)
Map Location 21,174,021 - 21,174,193
singlet/doubletsinglet
Overlap genenone
Upstream geneNdufb11, Rbm10, Ube1x, Pctk1, Usp11, LOC100043955, Araf, Syn1, Timp1, Cfp, Elk1, Uxt, A230072C01Rik, Zfp182, Spaca5, D930016N04Rik, Ssxa1, Gm1848, EG546268, EG629024, EG331392, Agtr2, EG668997
Downstream geneSlc6a14, LOC100043180, LOC100043182, LOC100043956, EG436197, Ppia-psx_207.1, 1700023I07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065C24.T7 (MSMg01no065_c24.b1)MSMg01-065C24.TJ (MSMg01no065_c24.g1)
ACCAG290457AG290458
length687684
length of high quality
(start - end)
174 (69 - 242)377 (71 - 447)
definitionCHROMAT_FILE: MSMg01no065_c24.b1 PHD_FILE: MSMg01no065_c24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:37 2005CHROMAT_FILE: MSMg01no065_c24.g1 PHD_FILE: MSMg01no065_c24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATCCGCGG
AATTCCAACGAATAACTAAAATATTATTTCAAAGTGAAATTTATTAAGCA
CCATGAGCATACTAATTATATTTTTTTTTTGCTTTCAGTGGCCCTACGAT
TTTATTGAGATTTAAAAACAGAGGTTTAAAAACAGAGTTTTAGTTTAGAT
TAGATTAATAGTTCTAAAGGTGTTATAATCCATTGTCAGGGATATCAAAA
ACCTTAGCACTAACAAAATATCAGTATTTGACATTTATCATAATAAATAA
GTGTGCTCTTAAGACAGTGAGCTATAATTTTGCTCTTTGCAGTCTAATAT
GAATTCTTGTAGAGACAAAAAGCAGAAGTTTTTGCTAGCTTACTGGAAAC
TGCTCATATTCTAAAGTCTCTGGAATTTTGTCTTGCGAGTTAGTTCATCA
CTCATACATGATGTGTGTGGGAACTTATCAGTTTTGTTGTGAAAATGCGA
CACATTTCACAGAAGGAGGAAATAGTTTTGAACAAAGTGCATGCATGCAA
ACTGCTGATATAATTTGTCCCACTGCGTTCTGAACATGCTTGAAGGTTTT
TCACAGCCTTATTTTTATGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGT
GTTTTTTTGTTGGCGCAAAAAGGTACACTTTGGGGAA
CACATGAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTGCTTAGCTTTATAACCCATTTTTAATA
GGGTTATTTGGTTCTCTGGAGTCTAACTTCTCAAAAATATGAATTCAGAA
TTGGTCCTGTCAAAAGGAAATGCAGGTACAAAGAGTGGAGGAGAGACCAA
AAGGAAGGCCATCCAGAGACTGCCCCACCTGGGGATCTATCCCATCTGAA
GACACCAAACACAGATGCTATCATTGATGTCAAAAAGTGCTTGCTGACAG
GAGGCTGATACAGCTGTCTGCTGAAAGGCTGTGCCAGAGCCTGTCAAATA
CAAATGCAGATGCAAGCAGCCAACCATCAATCTGAGCACTGGGACCCCAA
TGGAGGAGTTAGGGGAAGGACTGAAGAAACTTGAAAGGGTTAGTAACCCC
ACAGAAAGAACAACATATATACCATGACATACTTGCTCAGTTACCAAAAG
GATTTAGTGTCTCATTTTTAATTATATGGGTGAACTGGAGATAATTATGT
TAAATGAAATAAACCAGACGGATAAGGACAAGAATCACTTGGTTCTTGTT
AATGTGAAAACCTACAAAGATTGATCTCACAGATGTTCAAAGTAGCCAGA
TGGATGGCAAAATCCTGGGATAGTGATACAGTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_c24.b1 MSMg01no065_c24.b1 CHROMAT_FILE:
MSMg01no065_c24.b1 PHD_FILE: MSMg01no065_c24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:37 2005
         (174 letters)



>mm_chrX_21173821_21174393
          Length = 573

 Score =  313 bits (162), Expect = 3e-90
 Identities = 171/174 (98%), Gaps = 1/174 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatattatttcaaagtgaaatttattaagcaccatgagcatactaattatatttttttt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 373 aaatattatttcaaagtgaaatttattaagcaccatgagcatactaattata-ttttttt 315

                                                                       
Query: 61  ttgctttcagtggccctacgattttattgagatttaaaaacagaggtttaaaaacagagt 120
           |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ttgccttcagtggccctacaattttattgagatttaaaaacagaggtttaaaaacagagt 255

                                                                 
Query: 121 tttagtttagattagattaatagttctaaaggtgttataatccattgtcaggga 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tttagtttagattagattaatagttctaaaggtgttataatccattgtcaggga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 573
Length adjustment: 8
Effective length of query: 166
Effective length of database: 565
Effective search space:    93790
Effective search space used:    93790
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)