This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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search by nearby gene name.
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Search Result
BAC
Clone Name
MSMg01-065M07
Chromosome
X (Build37)
Map Location
14,171,111 - 14,295,403
singlet/doublet
doublet
Overlap gene
none
Upstream gene
Cask
,
Gpr34
,
Gpr82
,
LOC385327
,
EG385328
Downstream gene
LOC668991
,
4930403L05Rik
Link
Open Mouse BAC browser
Click to get alignment info.
name
Cask
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:12361
MGI:1309489
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Gpr34
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:23890
MGI:1346334
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Gpr82
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:319200
MGI:2441734
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC385327
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:385327
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 Proteins
pseudo
: _no_value
name
EG385328
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:385328
MGI:3643774
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC668991
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:668991
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 3 Proteins
pseudo
: _no_value
name
4930403L05Rik
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:67395
MGI:1914645
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Cask
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:133504494
GeneID:12361
MGI:1309489
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: calcium/calmodulin-dependent serine protein kinase (MAGUK family)
transcript_id
: NM_009806.2
name
Gpr34
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142358042
GeneID:23890
MGI:1346334
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: G protein-coupled receptor 34
transcript_id
: NM_011823.3
name
Gpr82
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:141802746
GeneID:319200
MGI:2441734
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: G protein-coupled receptor 82
transcript_id
: NM_175669.3
name
EG385328
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:77539461
GeneID:385328
MGI:3643774
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: predicted gene, EG385328
transcript_id
: NM_001034100.1
name
4930403L05Rik
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142383460
GeneID:67395
MGI:1914645
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: RIKEN cDNA 4930403L05 gene
transcript_id
: NM_026128.2
name
Cask
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:133504495
GeneID:12361
MGI:1309489
definition
GO_component
: GO:0016323 - basolateral plasma membrane [Evidence IDA]; GO:0005829 - cytosol [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0045202 - synapse [Evidence IDA]; GO:0019717 - synaptosome [Evidence IDA]
GO_function
: GO:0005524 - ATP binding [Evidence IEA]; GO:0005516 - calmodulin binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
GO_process
: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]
codon_start
: 1
product
: calcium/calmodulin-dependent serine protein kinase
protein_id
: NP_033936.2
name
Gpr34
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:31560528
CCDS:CCDS30028.1
GeneID:23890
MGI:1346334
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]
GO_process
: GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
note
: G-protein-coupled receptor
product
: G protein-coupled receptor 34
protein_id
: NP_035953.2
name
Gpr82
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:28316782
CCDS:CCDS30029.1
GeneID:319200
MGI:2441734
definition
GO_function
: GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]
GO_process
: GO:0007165 - signal transduction [Evidence IEA]
codon_start
: 1
note
: G protein-coupled receptor GPR82
product
: G protein-coupled receptor 82
protein_id
: NP_783600.1
name
EG385328
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:77539462
GeneID:385328
MGI:3643774
definition
GO_component
: GO:0005694 - chromosome [Evidence IEA]; GO:0000786 - nucleosome [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA]
GO_function
: GO:0003677 - DNA binding [Evidence IEA]
GO_process
: GO:0007001 - chromosome organization and biogenesis (sensu Eukaryota) [Evidence IEA]; GO:0006334 - nucleosome assembly [Evidence IEA]
codon_start
: 1
note
: novel protein similar to histone 1, H2a Hist1h2a
product
: hypothetical protein LOC385328
protein_id
: NP_001029272.1
name
4930403L05Rik
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:13385638
CCDS:CCDS30031.1
GeneID:67395
MGI:1914645
definition
GO_function
: GO:0004864 - protein phosphatase inhibitor activity [Evidence IEA]
GO_process
: GO:0009966 - regulation of signal transduction [Evidence IEA]
codon_start
: 1
note
: novel gene similar to protein phosphatase 1 regulatory subunit 2 Ppp1r2
product
: type 1 protein phosphatase inhibitor
protein_id
: NP_080404.1
name
LOC385327
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:385327
definition
number
: 3
pseudo
: _no_value
name
LOC385327
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:385327
definition
number
: 2
pseudo
: _no_value
name
LOC385327
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:385327
definition
number
: 1
pseudo
: _no_value
name
LOC668991
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149270997
GeneID:668991
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 3 Proteins
product
: similar to ribosomal protein L6
pseudo
: _no_value
transcript_id
: XR_033255.1
clone name
MSMg01-527G19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-196F02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-085F11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-536J11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-342F04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-440F16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-419L23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-143M01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-453D14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-488C23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-510I16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-414L16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-068C23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-177B24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-090D02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-342J23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-383D10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-478D06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-119P16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-136D23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-449K03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-277O23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-378D15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-405G06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-068I13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-439H10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-073A04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-372F13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-462F21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-459E17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-514P05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-526H24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-344F21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-065M07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-315L01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-522H23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-262J11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-546P04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-049D01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-090I24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-460F24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-068A21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-280K01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-273N09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-408G16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-124O11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-512L18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-237L09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-408M24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-410M24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-167O06
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-482C10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-102I12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-230I06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-082F06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-116D02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-324J14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-116O21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-073M08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-269D04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-273D16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-251E08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-008L09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-166D08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-345G14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-259E20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-095M06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-323N15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-031E08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-075G11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-206G07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-285L24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-129G02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-130L06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-074L12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-147F05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-134O12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-180G21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-174P24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-126N19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-085F10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-292J10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-289A03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-316L14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-280N01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-107D16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-170L22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-327G16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-152A23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-004G03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-222L22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-291B16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-120I16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-243J20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-009B15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-262K13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-063O18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-152K09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-319H12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-185N05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-151H10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-128N12
singlet/doublet
singlet
plural/unique
unique