BAC Information

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BAC

Clone NameMSMg01-067P01
ChromosomeX (Build37)
Map Location 87,011,305 - 87,011,865
singlet/doubletsinglet
Overlap genenone
Upstream geneEG436213, LOC667919, LOC100041727, LOC667934, Pet2, EG629419, 4932429P05Rik
Downstream geneLOC633246, Nanog-ps1, 4930415L06Rik, EG547215, Gm370, LOC194615, LOC629471
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067P01.T7 (MSMg01no067_p01.b1)MSMg01-067P01.TJ (MSMg01no067_p01.g1)
ACCAG292554AG292555
length698698
length of high quality
(start - end)
566 (44 - 609)285 (75 - 359)
definitionCHROMAT_FILE: MSMg01no067_p01.b1 PHD_FILE: MSMg01no067_p01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:12 2005CHROMAT_FILE: MSMg01no067_p01.g1 PHD_FILE: MSMg01no067_p01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAATATGATGTCGGGTGCTTTAAGGTAAATTTCCAAATAATCAATAAA
ATATTAAAAAGATTCAGAAATACCTCTGTCCATTTCCACTGTTGGTGGGC
CACAAGAACATCAACAATAGCATATATGGCTAGCTCAGATACATACAGGA
TCATAGATTGTTGCTTCAGTCTCTGTGAGCCCCTTTGATTCTTGTTTAGT
GACTTCTATGTTCTGTGTTCTCCCATGTCCTTGAAACATCTGAGTCCTAG
AATCCTTCCTCCACTTCTTCACAGGGCTTTTCTTCTATGGGTTTTTCCTT
GTGTTTGTTATCTTGATGATGTCTCTCTAATAAAAGTTGTACTAGTCCCT
GATTTTGGAGTATAGCACAATAACATTGGAAATAATTTCACTGACTTTAT
GTTTTCATTTTTGCCAGGCATATTTGGTTCTATCACCATTTAGAATAACC
TTTTTATAGTTTCATTTATTTGCCCACAAAATTAATAATATTTTTAACAG
CTAGGTAATACCCCATTGTGTATATGAACAACATTTTTTTCTGGTCTTTC
ATTAATAGACATTTAATGTGTTTCTAGGTTCTGGCTATCATAAATAAAGC
TGATATGAACTTTGTTGAGCAATAATTCCTGAGGCAAAAAACAGTGTT
ATCGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATAACGAATGGGTGA
GAAGTACCTGAAAAGATGTTCAGCATCCTTAATCATCAGGGAAATACAAA
TCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTATTATC
AAAAATTCAGGTGACAGCAGATGCTGGCAAGGTTGTGGAGAAAGAGGAAC
CCTCCTCCATTGTTGGTGGGATTGAAAGCTTGTACAACCACTCTGGAAAT
CAGTCTGGTGGTTCCTCAGAAAATTGGACATGTTACTACAGGAGGATCCC
GCAATACTTCTCCTGGGCATATATCCAGAAGATGTTCCAACTGATAAGAA
AGACACATGCTCCACTATGTTCATAGAAGAATTATTTATAATAGTCGGAA
GCTGGAAAGAACCAAGATGCCCCTCAACAGAGGAATGGAGACAGAAAATG
TTGTACATTTACACCATGTAGTACTACTCAGCTATTAAAAAGAATGATTT
TATGAAATTTCTAGGGAAATGTAAAGACCTGCACTGCCTCCTCCTGATTG
AGGTAACCCAATTTCACAAGAACTCACATGATATGTACTCTCTGATAAGC
GTATATCAGCCCTAAGATTTTTAACACCCTCCCATATTTATACACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_p01.b1 MSMg01no067_p01.b1 CHROMAT_FILE:
MSMg01no067_p01.b1 PHD_FILE: MSMg01no067_p01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:12 2005
         (566 letters)



>mm_chrX_87011102_87012066
          Length = 965

 Score = 1027 bits (531), Expect = 0.0
 Identities = 555/563 (98%), Gaps = 2/563 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaatatgatgtcgggtgctttaaggtaaatttccaaataatcaataaaatatta 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaatatgatgt-gggtgctttaaggtaaatttccaaataatcaataaaatatta 262

                                                                       
Query: 64  aaaagattcagaaatacctctgtccatttccactgttggtgggccacaagaacatcaaca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaaagattcagaaatacctctgtccatttccactgttggtgggccacaagaacatcaaca 322

                                                                       
Query: 124 atagcatatatggctagctcagatacatacaggatcatagattgttgcttcagtctctgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atagcatatatggctagctcagatacatacaggatcatagattgttgcttcagtctctgt 382

                                                                       
Query: 184 gagcccctttgattcttgtttagtgacttctatgttctgtgttctcccatgtccttgaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gagcccctttgattcttgtttagtgacttctatgttctgtgttctcccatgtccttgaaa 442

                                                                       
Query: 244 catctgagtcctagaatccttcctccacttcttcacagggcttttcttctatgggttttt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 catctgagtcctagaatccttcctccacttcttcacagggcttttcttctatgggttttt 502

                                                                       
Query: 304 ccttgtgtttgttatcttgatgatgtctctctaataaaagttgtactagtccctgatttt 363
           |||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ccttgtgtttggcagcttgatgatgtctctctaataaaagttgtactagtccctgatttt 562

                                                                       
Query: 364 ggagtatagcacaataacattggaaataatttcactgactttatgttttcatttttgcca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ggagtatagcacaataacattggaaataatttcactgactttatgttttcatttttgcca 622

                                                                       
Query: 424 ggcatatttggttctatcaccatttagaataacctttttatagtttcatttatttgccca 483
           ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 623 ggcatatttggttctatcaccatttagaataacatttt-atagtttcatttatttgccca 681

                                                                       
Query: 484 caaaattaataatatttttaacagctaggtaataccccattgtgtatatgaacaacattt 543
           ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 682 caaaattcataatatttttaacagctaggtaataccccattgtgtatatgtacaacattt 741

                                  
Query: 544 ttttctggtctttcattaataga 566
           |||||||||||||||||||||||
Sbjct: 742 ttttctggtctttcattaataga 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 965
Length adjustment: 10
Effective length of query: 556
Effective length of database: 955
Effective search space:   530980
Effective search space used:   530980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)