BAC Information

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BAC

Clone NameMSMg01-068I13
ChromosomeX (Build37)
Map Location 13,642,254 - 13,642,447
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp9x, LOC100043000, LOC100043002, LOC675380, Ddx3x, LOC385326, LOC634019, LOC668990, LOC100043947, LOC100043948, Nyx, LOC675416, Cask, Gpr34, Gpr82, LOC385327
Downstream geneEG385328, LOC668991
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068I13.T7 (MSMg01no068_i13.b1)MSMg01-068I13.TJ (MSMg01no068_i13.g1)
ACCAG293006AG293007
length721759
length of high quality
(start - end)
197 (46 - 242)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no068_i13.b1 PHD_FILE: MSMg01no068_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:00 2005CHROMAT_FILE: MSMg01no068_i13.g1 PHD_FILE: MSMg01no068_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGGGTGTATGTGGTACTTGGGATTGAACCCAGGGTCTCTCACA
AGACAGGCAAACAATCCATCACTGAAGCATACACCAGCTCTTAAAAAAAT
CCAGTGATTTTGAGGCGAGTCTCTTTACAGTGCGCAGCCTATTGTTCAAC
TCACTTGTAATACTGGGGTGCATTGAACTTGAGGTCCTCCAGCCTCAACT
CCTGAATATCTGGGATTATAAACTTGAGTCCCCAAAGCCTGGGCCTGCTG
AAGCCCCTTGGTCAATAATTTGAAATTGTTACCAACCCTCTGCGGTCAAC
CGGGAAATTTGAACCCCCCCGGGGATTTTTTTTTTTTAACCCCCCCCCCC
CCCCCCCCATATTTGGGTGTTTTTTAAAGTTTGTTTTTAAAAGGTCCCCC
CTGCGCGTATACTCCCCCTTACAAAAAAAAAAAATGCTCTCTCTCGGGGT
GGTGTGGTTTCTTTCTTCTCCCCCCGCCTATTATTCCTTACTCGGCACCT
ATTTCCCTTCAATCAATAATAATATTCCCCCCTCTTTAAAATATTTTGTA
CTAAGTAAATTTTTCTTCTGGGAGGCCTTATTTTCCAGGGCGCCCCCTAC
ACATTTTTATTCTCTTCTTTTTCTATGGAGCGGTCGGCTTTCTTTTATTT
AAGGCCCCCTCTCATAACACN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTT
TTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTAT
ATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTT
TCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTT
GCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGCCAATTCTCGATCTTA
CAGTACAAGCCATTGCTGTTCTGTTCTTTAAGTTTTCCCCTGTGCCCATA
TCTTCAAGGCTTTTTCCTACATTCCGATACAAGAGCCCCAGTGTCTCTGG
TTTTATGTGAAGTTTCTTGCTCCACTTAAAAAAAGAAATAAAACCGGGGG
GGGGGGGAGTCTTCTGATATATCCAGTTACCCCGGAGTTTTTGACTCTAG
CTGTATTTGTATGTAAACATGGCCTATTCGGTTCATCACTGTTTAGAGAG
GGCCCATTGTCGTGCAATTTTTGTTTGGCCCCTTTTCCGGGCATCTCTCT
TGTTTTCTTTTGGGTTCACCTCTTTATTTTTGTGTTTGTGTTATCTCTGG
CGGCGTTTTTGTCTTCTTCGTTTGCACCACTAGATTGATCTTTAGTCCCG
TTACGCCCCCTAATTTTGTTTCCGTTAATCGCTCCCGCCTTTCGCTTTCT
GCTCATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_i13.b1 MSMg01no068_i13.b1 CHROMAT_FILE:
MSMg01no068_i13.b1 PHD_FILE: MSMg01no068_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:00 2005
         (197 letters)



>mm_chrX_13642051_13642647
          Length = 597

 Score =  352 bits (182), Expect = e-102
 Identities = 191/194 (98%), Gaps = 1/194 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgggtgtatgtggtacttgggattgaacccagggtctctcacaagacaggca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctttgggtgtatgtggtacttgggattgaacccagggtctctcacaagacaggca 263

                                                                       
Query: 65  aacaatccatcactgaagcatacaccagctcttaaaaaaa-tccagtgattttgaggcga 123
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 264 aacaatccatcactgaagcatacaccagctcttaaaaaaaatccagtgattttgaggcga 323

                                                                       
Query: 124 gtctctttacagtgcgcagcctattgttcaactcacttgtaatactggggtgcattgaac 183
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtctctttatagtgcgcagcctattgttcaactcacttgtaatactggggtgcattgaac 383

                         
Query: 184 ttgaggtcctccag 197
           ||| ||||||||||
Sbjct: 384 ttgtggtcctccag 397


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 597
Length adjustment: 8
Effective length of query: 189
Effective length of database: 589
Effective search space:   111321
Effective search space used:   111321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)