BAC Information

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BAC

Clone NameMSMg01-069A15
ChromosomeX (Build37)
Map Location 84,053,006 - 84,053,193
singlet/doubletsinglet
Overlap geneIl1rapl1
Upstream geneLOC100041562, 5430427O19Rik, 1700072E05Rik, Nr0b1, CN716893, LOC667841, LOC236427, EG667852, EG436212, Gm41, EG629374, EG637027
Downstream geneLOC667876
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069A15.T7 (MSMg01no069_a15.b1)MSMg01-069A15.TJ (MSMg01no069_a15.g1)
ACCAG293392AG293393
length674688
length of high quality
(start - end)
447 (111 - 557)188 (120 - 307)
definitionCHROMAT_FILE: MSMg01no069_a15.b1 PHD_FILE: MSMg01no069_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:40 2005CHROMAT_FILE: MSMg01no069_a15.g1 PHD_FILE: MSMg01no069_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCTATACGACTCCTATTGCGAGAGAATCCGCGGAATTCTCAACTGTGCC
AATGCAAATGGCTGAGAAGCACCTAAAGAAATGTTCAACATCTTCAGTCA
TCAGGGCACATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGT
CAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAGATGCTGGCAAGAAT
GTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGCAAGCTGGTA
CAACCACTATGAAAACCAGTCTGGCAGTTCCTCAGAAAATTGGACATAGT
TCTCTCTTAAGATCCAGCAATACCACTCCTGGGAATATACCCAGAATATG
CTCCAACCTGTAATAAGGACACATGCTCCACTGTGTTCATAGCAGCCATT
TTTATAATAGTCAGAATCTGGAAACAACCTAGGTGTTCCTCAAAAGAGAA
ACGGAAAATGTGGTATGTTTACACAATGGGGTACTACTCCGCTATTAAAA
ACATGAAATTCACAGGCAAATGGATGGATCTAGAAAATATCATCCTGAGT
AGGGCAACTCAGTCCCAAAAGAACACACATGGTATGCACTCACTGATAAG
TGTATATTAGGCAAAGAGTGTGTAATGTCCACAGTACATCTCATGGACCA
TCTGAAGCTCAAGAGGAAGGAAGA
ATGAAATGAGTAGCCTGGCGGCGCCTGTTTCTTACTTGAGGTGAACTATA
GAAGTTTCACGAACTACCATGCATGCATATAATGAATTTTCACATGACTA
GAAATTCCGTGTTTCCTTACTTGATATAGCTCATTTGACACTTTATTCTT
ATTTTCTGTTTTGCTACTTTCCGATAAATGATGAGAACAAGCCCAGAAAG
CTTAAATACTCAAAATGATCTGATCAATCAGATCAATGAGCACTTTCCTT
AATCCAAAATGACATTTGGCTCAGAACACACATCCTATCTGTAGCATTAA
GGATTAATTTTCTTATTTGTAACACACTTGAGGCTAACACCAAGAGNTTT
TTTGTTTTTTCCCCCCCCCCCCCCTATGGGTTTACTCTTTTTTCTAATTT
ACGCTACCCGGTTAATAAAAAAATAACAAGCGTGGGGGGGGGAGTTTCTT
GCTATATTTCTTTAGCATATGACTTATACTATTCATATAACCTTATGATC
GCTCTCTACTTGCCTTAATCACTCCTTTACTTGTTTTTCCTCTACTATAT
TACTAATACTCATCTCTCTACCTCTATAATCCCCGCATACAAAACTTCTG
CATTCGCTTCGGCTTCCCTTTTCTCAAGACAATACCATTCGTCTTTTTTC
CTTTCCTTCTATTCCCCTTTTCCCTCTTTCCCCCCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_a15.g1 MSMg01no069_a15.g1 CHROMAT_FILE:
MSMg01no069_a15.g1 PHD_FILE: MSMg01no069_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:40 2005
         (188 letters)



>mm_chrX_84052806_84053393
          Length = 588

 Score =  356 bits (184), Expect = e-103
 Identities = 187/188 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgatatagctcatttgacactttattcttattttctgttttgctactttccgataaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cttgatatagctcatttgacactttattcttattttctgttttgctactttccgataaat 329

                                                                       
Query: 61  gatgagaacaagcccagaaagcttaaatactcaaaatgatctgatcaatcagatcaatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gatgagaacaagcccagaaagcttaaatactcaaaatgatctgatcaatcagatcaatga 269

                                                                       
Query: 121 gcactttccttaatccaaaatgacatttggctcagaacacacatcctatctgtagcatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gcactttccttaatccaaaatgacatttggctcagaacacacatcctatctgtagcatta 209

                   
Query: 181 aggattaa 188
           | ||||||
Sbjct: 208 acgattaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 588
Length adjustment: 8
Effective length of query: 180
Effective length of database: 580
Effective search space:   104400
Effective search space used:   104400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)