BAC Information

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BAC

Clone NameMSMg01-069J05
ChromosomeX (Build37)
Map Location 66,656,401 - 66,656,844
singlet/doubletsinglet
Overlap geneAff2
Upstream geneLOC627888, LOC434788, Fmr1, Fmr1nb, LOC100040244, EG627927, LOC666882, LOC671950, LOC100040255
Downstream geneEG666577, 1700020N15Rik, Ids, 1110012L19Rik, 4930567H17Rik, LOC100040304
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069J05.T7 (MSMg01no069_j05.b1)MSMg01-069J05.TJ (MSMg01no069_j05.g1)
ACCAG293801AG293802
length699705
length of high quality
(start - end)
444 (75 - 518)239 (77 - 315)
definitionCHROMAT_FILE: MSMg01no069_j05.b1 PHD_FILE: MSMg01no069_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:22 2005CHROMAT_FILE: MSMg01no069_j05.g1 PHD_FILE: MSMg01no069_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAGACAGCCTACGAAATACACACAACTCCGCATATAGGTATGTGCA
GGTGAGGGCTTCTTCATTTTTCACTGGGCTTTCATTCCTTGTTCAATTCC
ACAATTAGTGATCATTTACTGAGTTGAAAAGTTACCACCTCATCTCAAAC
TGTAACAAATTACCATTTTAAACTGGGTTGACCTTTTCCATGTTTTCTAT
CTTTCTAGAGACACCCAGGGGAGGTAATTAGGTATTGTGGCATAAAAGAG
TTCTATCTTCATGAAACAAATAGGTCAGAAAATAAAGCAGTGATGCTCAT
GGTAACTGCACATGACTGGTTCACCCACTTTCAGTACGTTCATAAAAAAG
ACCAAATTAAGCTATGCAGATAACTGAGCATTCAGTGAAACATTTCAAAA
TGTCTTTAAAACTCAACAGTTTTACAGTGTCTGCCAAATAGCATTTTTGC
ATGTTTATCAAGAGAGACTGAAGTATACTATGAAAGCAAACTCACCTTAA
TAATTTGAGCTATAAAATACCATTATCACAATCATTCTACATCTTGAAGA
CACAGGTAGCCCCTTCTATTCTCCATCTGCTGTCTGTCCTCTCCTTCCGC
ATGCTCCCAGCACAATATTTCGGAACCTTATCTTCCACCAGTTATCTTG
TTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACTTGAAAAAATGTTCACCATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGGTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCTTGTTCATATCCCCCCACCATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGTAGCCTTATTTATAATAGCCTG
AAGCTGTATAGAACCTAGATGTCCCTCAACAGAGGAATGGATACTGTAAA
ATGTGGTACATCTACACAATGGAGCACTACTCAGCTATTATAAAGAATGA
ATTTATGACCTTCTTAGTCCTATGCATGGACCTGGAGGGCATCATCTTGA
TTGAGGCATCCTTTCTTTCAGAACCTCCCATTTTATGTATTCCCTGATAA
TTGGATATTACCCCCCTACCCACTAAAACCCCGCTTCTACATATCATTCG
CTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_j05.b1 MSMg01no069_j05.b1 CHROMAT_FILE:
MSMg01no069_j05.b1 PHD_FILE: MSMg01no069_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:22 2005
         (444 letters)



>mm_chrX_66656201_66657044
          Length = 844

 Score =  812 bits (420), Expect = 0.0
 Identities = 438/444 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacaactccgcatataggtatgtgcaggtgagggcttcttcatttttcactgggctttca 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 cacaactccgcatacaggtatgtgcaggtgagggcttcttcatttttcactgggctttca 585

                                                                       
Query: 61  ttccttgttcaattccacaattagtgatcatttactgagttgaaaagttaccacctcatc 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ttccttgtttaattccacaattagtgatcatttactgagttgaaaagttaccacctcatc 525

                                                                       
Query: 121 tcaaactgtaacaaattaccattttaaactgggttgaccttttccatgttttctatcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tcaaactgtaacaaattaccattttaaactgggttgaccttttccatgttttctatcttt 465

                                                                       
Query: 181 ctagagacacccaggggaggtaattaggtattgtggcataaaagagttctatcttcatga 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 464 ctagagacacccaggggaggtaattaggtattgtggcataaaagagttgtatcttcatga 405

                                                                       
Query: 241 aacaaataggtcagaaaataaagcagtgatgctcatggtaactgcacatgactggttcac 300
           |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 404 aacaaagaggtcagaaaataaagcagtgatgctcatggtaactgcacaggactggttcac 345

                                                                       
Query: 301 ccactttcagtacgttcataaaaaagaccaaattaagctatgcagataactgagcattca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ccactttcagtacgttcataaaaaagaccaaattaagctatgcagataactgagcattca 285

                                                                       
Query: 361 gtgaaacatttcaaaatgtctttaaaactcaacagttttacagtgtctgccaaatagcat 420
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gtgaaacatctcaaaatgtctttaaaactcaacagttttacagtgtctgccaaatagcat 225

                                   
Query: 421 ttttgcatgtttatcaagagagac 444
           ||||||||||||||||||||||||
Sbjct: 224 ttttgcatgtttatcaagagagac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)