BAC Information

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BAC

Clone NameMSMg01-072B01
ChromosomeX (Build37)
Map Location 138,838,917 - 138,839,293
singlet/doubletsinglet
Overlap genenone
Upstream geneCol4a6, Col4a5, Irs4, LOC633596, EG666488, LOC622901, EG436234, EG622956, Gucy2f, LOC623006, LOC100039023, Nxt2, EG434858, Kcne1l, Acsl4
Downstream genePpia-psx_1100.1, EG633736, EG245651, LOC100039086, EG436235, Tmem164, Ammecr1, Rgag1, LOC209541, Chrdl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072B01.T7 (MSMg01no072_b01.b1)MSMg01-072B01.TJ (MSMg01no072_b01.g1)
ACCAG295699AG295700
length682679
length of high quality
(start - end)
439 (37 - 475)370 (80 - 449)
definitionCHROMAT_FILE: MSMg01no072_b01.b1 PHD_FILE: MSMg01no072_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:40 2005CHROMAT_FILE: MSMg01no072_b01.g1 PHD_FILE: MSMg01no072_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTGCACGAGGATCCGCGGAATTCTTA
GTTCAGAGCATTTTCTAAAAATGGAGCCAGTTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCACACACACACACACACACACACAGAGACAGA
AAGACACACACAGAGACACACACACAGAAAGATACACACACAGAAAGACA
CACACACACATAGAAAGATACACACACAGAAAGACACACACACACAGAAA
GACACACACTCACTTGAACTATTCTAGGCTCACAGGAGTCCACATTAGAA
GTAGAGATGGGCTGGGTGTTTAGTTTCATGATAGAACACTTGCCTAGCAC
ACGTGAGGTCCTGGGTTCAGTCTTTAGCACCAAACAGCGAAGCAAACTAT
CAAGTCACAGAGGTAGAGACAGTGTCCTTACAGGCCAGTTACATGCCTGC
TCTACCATCAGTCTAGCTTGTAGGTTGGGTAGTAAGTAGTCCGTTATCCC
ACCTTTAGAAAATAGACATCTCTTGTTGGGAAAGAGGGGAGTGCAATCGC
ACACAAGCAATCTGAATACAAGAGGGTGTAAAAGGGGAGAGTGCAGAGAG
GAGGAGTTTCAACAATGTATATTTATACTTGAAAACCCTATAATGGAATC
TAATGTTTTACATGCCAAATTTTATTATAATT
CCACCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGGGAATTAGGGACAGGAGG
ACATTTGTGCTTCTGGAAATATAATTTTCCTAGCACATTCTCATTTGCTT
CTCATCTTTTCATCTTCTCAACTATATAAAAGAACTTGTGAAATCTCAGA
AACACTCCAAAATAGGAAGTTATCTACATTGAAATGAAAAAAAAGGAATC
ATGCAACAACAAAAAAAAGGTTATTTGACATCGTTAGTCATCAGAGAAAA
ATACATGAAAAGGACAACAGGTGAAGATATCATTTCATATACATACACAT
GGATGACTAAAGAATATTGAAAAATATTACCTGAAAAATAACAAGAATTG
GTGAGGATATTTTAAAAATGGAATCTTCCTACATAGCTGCCAGGAAAGCA
AAACGGTGTAGCTGCTTAGAAAGTAGTTCACTCATTCTTCATAAAGCTAA
TGTTAGAATTATCGAATACCCAACATTCCTGTTTCCAAACGTTTACCCTT
AGCAACTGATAATGACCGCGAACAAATGTACACATATGTTCATAGCAACA
CTATGCACAAGAGTAACCACGTGAAACCAGACCATCCATTTTTTGACCCC
AATTATCTATTTACCCAGGCAATTTGATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_b01.g1 MSMg01no072_b01.g1 CHROMAT_FILE:
MSMg01no072_b01.g1 PHD_FILE: MSMg01no072_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:41 2005
         (370 letters)



>mm_chrX_138838717_138839486
          Length = 770

 Score =  683 bits (353), Expect = 0.0
 Identities = 368/377 (97%), Gaps = 7/377 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgggaattagggacaggaggacatttgtgcttctggaaatataattttcctagcacatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgggaattagggacaggaggacatttgtgcttctggaaatataattttcctagcacatt 260

                                                                       
Query: 61  ctcatttgcttctcatcttttcatcttctcaactatataaaagaacttgtgaaatctcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcatttgcttctcatcttttcatcttctcaactatataaaagaacttgtgaaatctcag 320

                                                                       
Query: 121 aaacactccaaaataggaagttatctacattgaaatgaaaaaaaaggaatcatgcaacaa 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 aaacactccaaaataggaagttatctacattgaaataaaaaaaaaggaatcatgcaacaa 380

                                                                       
Query: 181 c-------aaaaaaaaggttatttgacatcgttagtcatcagagaaaaatacatgaaaag 233
           |       ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 caacaaaaaaaaaaaaggttattcgacatcgttagtcatcagagaaaaatacatgaaaag 440

                                                                       
Query: 234 gacaacaggtgaagatatcatttcatatacatacacatggatgactaaagaatattgaaa 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacaacaggtgaagatatcatttcatatacatacacatggatgactaaagaatattgaaa 500

                                                                       
Query: 294 aatattacctgaaaaataacaagaattggtgaggatattttaaaaatggaatcttcctac 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatattacctgaaaaataacaagaattggtgaggatattttaaaaatggaatcttcctac 560

                            
Query: 354 atagctgccaggaaagc 370
           |||||||||||||||||
Sbjct: 561 atagctgccaggaaagc 577


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)