BAC Information

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BAC

Clone NameMSMg01-073L01
ChromosomeX (Build37)
Map Location 50,266,154 - 50,403,104
singlet/doubletdoublet
Overlap geneLOC100040569, Phf6, Hprt1
Upstream gene1700080O16Rik, LOC100040495, Gpc4, Gpc3, Kis2, LOC100041925, LOC665929, 6330534C20Rik, LOC624936, LOC546298
Downstream geneC430049B03Rik, Plac1, 4632404H22Rik, 4930432H15Rik, LOC385527, Mospd1, LOC100040609, Etd, Cxx1c, LOC100040644, Cxx1a, Cxx1b, AW822252, 4930502E18Rik, 1700013H16Rik, EG547172, Zfp36l3, Xlr, LOC100040719, LOC100040730, LOC100040260, LOC100040271, LOC100040765, LOC194788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073L01.T7 (MSMg01no073_l01.b1)MSMg01-073L01.TJ (MSMg01no073_l01.g1)
ACCAG296926AG296927
length696702
length of high quality
(start - end)
419 (43 - 461)341 (77 - 417)
definitionCHROMAT_FILE: MSMg01no073_l01.b1 PHD_FILE: MSMg01no073_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:50 2005CHROMAT_FILE: MSMg01no073_l01.g1 PHD_FILE: MSMg01no073_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,266,154 - 50,266,568)(50,402,764 - 50,403,104)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAGAGACTTCCCCAAGGACAATCGGAGGGGGGGGGGACCCCGACTTTC
TGGCTGAAAGGAACCTACTGAAGTGTTGGGAAGGAAGAGACTTTTTCGAG
TTTATCCAGCGCCTTGGTTAGAGGGAGATCTGGGAGGCTAGTGTGCGATT
GGGGAATACATAACGGAGGGAATCCGCTCTGTTTCCTGTCTGGTCCTTTA
TTACATGGGCGAACAGCACGGCGTTCTTTTGCAGTTTCTATTCGTTTCGA
TATTCTGTGTGAAAGTGAAAAACAAATCTTTTGATGTTTGAAAAGCCTTT
AATTTTCCTCTGGTTCCTACGTAATATCGGGTCTTATTCATACAGTTCAA
ATTTCTTCACTACCCTTTGGCTTGAAACAACTGGAAAATTCCTTTAGTTT
CCTTTTGAATAACCGCAAAAAAAAAAAAAAAGTAGTGCTAAGCATGTAAT
AATATCGTGCAACCAAATTCAGGTGTCCTTCCGGTACATTTCCTATTCAT
TTATTTCTCTTCACTGCAACTTTGCTGATAGAACGATCGTGTTATCTTTG
GAGGATCGTACCCATATCTGTGAACTTTCACTGGCTCGCTTGCTTGATGT
CCTTCATCTTCCCGAACCGCCGTTCTGTTTTGTTCGGTTTTTTCGG
TTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTTAAAGCTTTGATCCTTTCTA
TAGACTCAAGTAAATTAAGGGAGCAAATATGAACTAACCATAGAGATTAA
TTTAGTGGCATCCTCAAAAGAACGTTTTTAGTCATTGTGAATAATCATAA
AAACTACCTAGAAACTTAGAAACATTCTTAAGATAACAAGCTTTTAAAAA
TCAAGGCCACAGAATTACACTAACTCTGGTGGCTGAAAGTAGAGTAGAAA
CTGGAAAGAAACTGCAAAACAAAGAGACTTTTTAAAAACAGAATTTGCAG
TAGGTTGGTTAGCTGCTTATTTGTTTTGTTTTTTTTTCCCCATCTTCACA
GTTTTGCTGTTTCTTTGCTTTGTTGTGCTTTGATTTGTGTCCCATTGTGA
AATGCTACTCGCTAAAAGGTCTTTAAGGGTCCTGGGAGATCCAGAAATTT
GAGGCTACACATGCAGGGATCTCAGACGTCTCGGGAATCATCATGTCCCG
AGATACCACTGTGCCCTTGTGACTGATTGATAACTGAAAGGTCTGGGAGC
CACTCCTCTTCCTAAGAATTGCTGGTCTGAGTATTATCGATACGAAAGGC
CAGGAGAGGACTGAGTCTTAGGCTAGGAGGAAAGGGGTTGCCATGCCACG
CG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_l01.b1 MSMg01no073_l01.b1 CHROMAT_FILE:
MSMg01no073_l01.b1 PHD_FILE: MSMg01no073_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:50 2005
         (419 letters)



>mm_chrX_50265950_50266768
          Length = 819

 Score =  764 bits (395), Expect = 0.0
 Identities = 410/415 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagagacttccccaaggacaatcggaggggggggggaccccgactttctggctg 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagagacttggccaaggacaatcggaggggggggggaccccgactttctggctg 264

                                                                       
Query: 65  aaaggaacctactgaagtgttgggaaggaagagactttttcgagtttatccagcgccttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaggaacctactgaagtgttgggaaggaagagactttttcgagtttatccagcgccttg 324

                                                                       
Query: 125 gttagagggagatctgggaggctagtgtgcgattggggaatacataacggagggaatccg 184
           ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 325 gttagagggagatctaggaggctagtgtgcgattggggaatacataacggagagaatccg 384

                                                                       
Query: 185 ctctgtttcctgtctggtcctttattacatgggcgaacagcacggcgttcttttgcagtt 244
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctctgtttcctgcctggtcctttattacatgggcgaacagcacggcgttcttttgcagtt 444

                                                                       
Query: 245 tctattcgtttcgatattctgtgtgaaagtgaaaaacaaatcttttgatgtttgaaaagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctattcgtttcgatattctgtgtgaaagtgaaaaacaaatcttttgatgtttgaaaagc 504

                                                                       
Query: 305 ctttaattttcctctggttcctacgtaatatcgggtcttattcatacagttcaaatttct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctttaattttcctctggttcctacgtaatatcgggtcttattcatacagttcaaatttct 564

                                                                  
Query: 365 tcactaccctttggcttgaaacaactggaaaattcctttagtttccttttgaata 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcactaccctttggcttgaaacaactggaaaattcctttagtttccttttgaata 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no073_l01.g1 MSMg01no073_l01.g1 CHROMAT_FILE:
MSMg01no073_l01.g1 PHD_FILE: MSMg01no073_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:50 2005
         (341 letters)



>mm_chrX_50402564_50403304
          Length = 741

 Score =  652 bits (337), Expect = 0.0
 Identities = 340/341 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttaaagctttgatcctttctatagactcaagtaaattaagggagcaaatatgaacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 actttaaagctttgatcctttctatagactcaagtaaattaagggagcaaatatgaacta 482

                                                                       
Query: 61  accatagagattaatttagtggcatcctcaaaagaacgtttttagtcattgtgaataatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 accatagagattaatttagtggcatcctcaaaagaacgtttttagtcattgtgaataatc 422

                                                                       
Query: 121 ataaaaactacctagaaacttagaaacattcttaagataacaagcttttaaaaatcaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ataaaaactacctagaaacttagaaacattcttaagataacaagcttttaaaaatcaagg 362

                                                                       
Query: 181 ccacagaattacactaactctggtggctgaaagtagagtagaaactggaaagaaactgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ccacagaattacactaactctggtggctgaaagtagagtagaaactggaaagaaactgca 302

                                                                       
Query: 241 aaacaaagagactttttaaaaacagaatttgcagtaggttggttagctgcttatttgttt 300
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 301 aaacaaagagactttttaaaaacagaatttgtagtaggttggttagctgcttatttgttt 242

                                                    
Query: 301 tgtttttttttccccatcttcacagttttgctgtttctttg 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgtttttttttccccatcttcacagttttgctgtttctttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)