BAC Information

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BAC

Clone NameMSMg01-073L16
ChromosomeX (Build37)
Map Location 134,376,699 - 134,376,976
singlet/doubletsinglet
Overlap geneIl1rapl2
Upstream geneRab9b, 1700014N06Rik, LOC621984, LOC100034363, 4930488E11Rik, LOC666244, 2810402A17Rik, Zcchc18, BC031748, LOC666277, LOC436231, LOC666288, LOC100041260, LOC100041272, LOC669737, Esx1, EG666303
Downstream gene1700025D03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073L16.T7 (MSMg01no073_l16.b1)MSMg01-073L16.TJ (MSMg01no073_l16.g1)
ACCAG296956AG296957
length699693
length of high quality
(start - end)
385 (45 - 429)283 (73 - 355)
definitionCHROMAT_FILE: MSMg01no073_l16.b1 PHD_FILE: MSMg01no073_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:53 2005CHROMAT_FILE: MSMg01no073_l16.g1 PHD_FILE: MSMg01no073_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTTTCCAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATCAGGCCAATGCAAATCAAAACAACCCTAAGATTC
CACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG
ATTGCAGGCTTGTACAACCTCTCTGGAAATCAGTCTGGCGGTTCCTCAGA
AAATTGGACATAGTACTATCTTGGAGGATCCAGCAATACCTCTCCTGGGC
ATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTAT
GTGCATAGCAGCCTTATTTATAATAGTCAGAAGCTGGAAAGAACCCTGAT
GCCCCTCAACAGAGGATTGGATACAGAAAATGTGGTACATCTACACTATG
GAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAA
ATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCTCTAA
GGAACTCACACAATATGTACTCACTGATAAGTGGATATTATCCCAAAACC
TAGGATACCCAAGATATAATATACCATTTCCTAAACTCATGAAATTCAT
CAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAGGCCCATGCCCTAACTAGTAAAAGCA
ATATACAGTATGTCTTGCCCCATAGATTCCTTGGATTGACAACTGCTTGC
TTGCCTAGAAAAAAATGGTTCAATAAGAACATATTTGAAATGCAATTAAC
CTATGATATTCAGTAATATATATACATATGTATATATACATATATACATA
TATACATATATATATATCAGAAATTAAGAAATTTATCTCAGAATGATTAA
ATAACTGTTTATGATCATTAAGTTATGAGTATTAGAGTTAGAACCCAAAC
AAATTCTTTATGATTCCAGCCTCCAACTTTAATCACTAAGTTATAAAACT
ACTCTGGTGAACTTGCTGCCATGACAGGTTCTAAATTACCGTTACTAAAC
TTAAAGTACTGGATATTACCTTAGTATTTATTGAGTAAAGAACATTTTTA
TTTAGCATCAGATGATTATAAATTATGTTTGGTTTTAAGGCTACTTTTCT
TTCTCAGCCAATCAGAGAAAGATGAAGCCACCATGAGAAGTAATGACTTT
TTAATAATGTAGGTAACAGACGCTAGTACTCTTTGCCCAACAGACTGGCT
ATTTTCCTTTCTTACCGAATAATGAGGAGAATATTGACCTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_l16.g1 MSMg01no073_l16.g1 CHROMAT_FILE:
MSMg01no073_l16.g1 PHD_FILE: MSMg01no073_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:53 2005
         (283 letters)



>mm_chrX_134376633_134377316
          Length = 684

 Score =  460 bits (238), Expect = e-134
 Identities = 270/286 (94%), Gaps = 11/286 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggcccatgccctaac-tagtaaaagcaatatacagtatgtcttgccccatagattcct 59
           ||||||||||||||||| ||||||||||||||||||||||||||||   |||||||||||
Sbjct: 344 aaggcccatgccctaacatagtaaaagcaatatacagtatgtcttgatgcatagattcct 285

                                                                       
Query: 60  tggattgacaactgcttgcttgcctagaaaaaaatggttcaataagaacatatttgaaat 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tggattgacaactgcttgcttgcctagaaaaaaatggttcaataagaacatatttgaaat 225

                                                                       
Query: 120 gcaattaacctatgatattcagta--atatatatacatatgtatatatacatatatacat 177
           ||||||||||||||||||||||||  ||||||||||||||||        || |||||||
Sbjct: 224 gcaattaacctatgatattcagtaatatatatatacatatgt--------atgtatacat 173

                                                                       
Query: 178 atatacatatatatatatcagaaattaagaaatttatctcagaatgattaaataactgtt 237
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 atatacatgtatatatatcagaaattaagaaatttatctcagaatgattaaataactgtt 113

                                                         
Query: 238 tatgatcattaagttatgagtattagagttagaacccaaacaaatt 283
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 tatgatcattaagttatgagtattagagttagaacccaaacaaatt 67


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 684
Length adjustment: 9
Effective length of query: 274
Effective length of database: 675
Effective search space:   184950
Effective search space used:   184950
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)