ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAGGAACACAAAAGGAAAACTTTAATGATTGAGTTTCTCTAGCTTAA
TCTGATTTCCAGCATCATATATCTCACTATGTATAAGACTAACATATCTT
GCAAAATGCAGAAGAATAGAATTTTAGAAAATACTAAAGTTACTTTCATG
TTGTTGAGAAAATGCAAGAAATATATGAATTATAAAGTTATGCTGAACTC
TTTTATTAAGCTGAATAATTTTTCTGACAAATAAATTATAGAGAAAAATT
AAGCAAATTATGTTAGATTGAAGATGTCTAATTCAATTAAATTATGAATA
TATTTCCAAAAGTAAATTTTAATAATAGCTTGTTATGTTCAACAGACAAC
ACTTTTTGTTAAAGTATGCATGACACACTTAGGAAAATACATTTGATTAA
TTAAAACAAAGAACAAAAACATTTCCACTGAGGTTAATTCAATGTTCTCA
CGGAAATACACTAATACTTTAACAATAATGATTTAAAGATCTGAATCAAG
TTATATAGCATTTTTAGCACATTCTGTTTATTTATAAAATGTGCTTATTA
TAATTTTATTTAGTGGTAATAGTGACAGTCTTGGTGCTGGTGCTATATAC
GTGTGTATTTCATCTTTTGAGTTTGAATGAAAAATCATATGT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXATTAGTGATATTTCATATATATATATATATACATATATATATATAT
ATACCGATTCACCTGTATGACTCAGGGGCAAGGCACTCAAAAGGTTCTCA
AAAAAAACAAAACAAACAAACAAAAAAACAACCAACCAACCAACCAACCA
ACCAACCAACCAAACAAACAAAACACTTCTATGTTCATTGAAGCTTTAGT
CACAAGAGCTAGGAAATTGAAATTAGCCAATATAGCTTCCAATTGCTGAA
TAAATAATTTAAAAGATGTATGTGGTGGTTTCAATATGCTTGGCCCATAG
GTAGTGGTACTGATAGGAGGTGTGGCCTTGTTGTTGCAATTGTGGCATTG
AGTGTTCAGGCTCTACCCATTGCAGGGAGAGCTTCCTCCTAGCTGCTTGA
GGATGCTAGACTCTCCTGATTGCCTTTGGATCAAGATGCAGATACAGAAA
TCTGAACTCATTCTCCAGCACCATATCTGACTACAATACAAGCTGCCATG
TTTCCTACTATAATGATAATGGACTAAACACCTGAAACTGTAAGCCAATT
TCAATTAAATGTTTGCATTTATAAGAACTGACTTGATTATAGTGTATCCT
TCACCGCAAAGGAAATCATAACT

Query= MSMg01no074_b23.b1 MSMg01no074_b23.b1 CHROMAT_FILE:
MSMg01no074_b23.b1 PHD_FILE: MSMg01no074_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:24 2005
         (649 letters)



>mm_chrX_43390181_43391229
          Length = 1049

 Score = 1162 bits (601), Expect = 0.0
 Identities = 631/645 (97%), Gaps = 7/645 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaggaacacaaaaggaaaactttaatgattgagtttctctagcttaatctgatt 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaggaacacagaaggaaaactttaatgattgagtttctctagcttaatctgatt 264

                                                                       
Query: 65  tccagcatcatatatctcactatgtataagactaacatatcttgcaaaatgcagaagaat 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tccagcatcatatatttcactatgtataagactaacatatcttgcaaaatgcagaagaat 324

                                                                       
Query: 125 agaattttagaaaatactaaagttactttcatgttgttgagaaaatgcaagaaatatatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agaattttagaaaatactaaagttactttcatgttgttgagaaaatgcaagaaatatatg 384

                                                                       
Query: 185 aattataaagttatgctgaactcttttattaagctgaataatttttctgacaaataaatt 244
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 385 aattataaagttatgctgaactcttttattaagctgaatactttttctgacaaataaatt 444

                                                                       
Query: 245 atagagaaaaattaagcaaattatgttagattgaagatgtctaattcaattaaattatga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atagagaaaaattaagcaaattatgttagattgaagatgtctaattcaattaaattatga 504

                                                                       
Query: 305 atatatttccaaaagtaaattttaataatagcttgttatgttcaacagacaacacttttt 364
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 505 atatatttccaaaagtaaattttaataatagtttgttatgttcaacagacaacacttttt 564

                                                                       
Query: 365 gttaaagtatgcatgacacacttaggaaaatacatttgattaattaaaacaaagaacaaa 424
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 565 gttaaagtatgcatgacacacttaggaaaatacgtttgattaattaaaacaaagaacaaa 624

                                                                       
Query: 425 aacatttccactgaggttaattcaatgttctcacggaaatacactaatactttaacaata 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aacatttccactgaggttaattcaatgttctcacggaaatacactaatactttaacaata 684

                                                                       
Query: 485 atgatttaaagatctgaatcaagttatatagcatttttagcacattctgtttatttataa 544
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 685 atgatttaaagatctgaatcaagttatatagcatttttagcacattctgtttatttctaa 744

                                                                       
Query: 545 aatgtgcttattataattttatttagtggtaatagtgacagtcttggtgctggtgctata 604
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||      
Sbjct: 745 aatgtgcttattataattttatttagtggtaatagtgacggtcttggtgctggt------ 798

                                                        
Query: 605 tacgtgtgtatttcatcttttgagtttgaatgaaaaatcatatgt 649
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 -acgtgtgtatttcatcttttgagtttgaatgaaaaatcatatgt 842


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)