BAC Information

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BAC

Clone NameMSMg01-074I06
ChromosomeX (Build37)
Map Location 53,525,336 - 53,525,471
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC626274, LOC625210, LOC100039055, LOC100039066, LOC676623, EG626315, LOC666268, LOC666097, LOC666107, LOC626348, LOC100039146, LOC100039160, EG630825, LOC100039187, LOC673263, 3830403N18Rik, LOC626439, Gm773, LOC100039254
Downstream geneLOC100039266, LOC100039276, 1600025M17Rik, Zfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b, Gm648, Tmem32, Slc9a6, LOC100039342, Fhl1, Mtap7d3, Gpr112, Brs3, Htatsf1, Vgll1, Cd40lg, Arhgef6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074I06.T7 (MSMg01no074_i06.b1)MSMg01-074I06.TJ (MSMg01no074_i06.g1)
ACCAG297553AG297554
length734747
length of high quality
(start - end)
55 (130 - 184)141 (123 - 263)
definitionCHROMAT_FILE: MSMg01no074_i06.b1 PHD_FILE: MSMg01no074_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:54 2005CHROMAT_FILE: MSMg01no074_i06.g1 PHD_FILE: MSMg01no074_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:54 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXCTATTTCCAGAGGATCCGCGGAATTC
ACTCCTATTCTCCCCCATTCTCGGGGTGAAATACTCAGGTGATGGGAAGC
AATGAATCAGGAGCTGTCATCCCATATCAGGTGTTGAAATGTCACGCTGC
AGGTTATAAAAGCAGCGCCATTTTCCCGGTTCGGTATCTTCCTGATAAGC
AAGCAATAAAGCTCTTGCTGTGCAAGATTCTAGTTTGTTGCATCTTTCTT
GCCGGCCGAGCGGGACGCAATAGTGAATAGCCTTCACCTCCCTGCTGCTG
CTCTCCTAGCATTGACCATACTCTGACTTGTCACTTTCCAGTTTACTGTG
CTAGTACATATTTTTTACAACACCCCCCTCCTTCTATAGCAGCTTCTACC
TTTCTTCGTAACACCCCCCCTCTGTAAATATTCGTATAAGAGTCCGTACA
TAGCTCACCCTGACAGATTGTATTGTCTAGTACTCCCCATTGTCTAGTAC
TCAATGATTATCGTTGTCTTTTCTACACTTGTTTTCATCGTACCCTACTT
ACTTACATGTACAACCCCTTGTACTCCCCCCTTTTTTTATTCTGCATTCC
TTTTAACATCACCGGTAACGTTTTTGCTTATTCCCCCTCTCTCGCACCTT
TTTTTTTTCACTTCCTTCCTCCCTCTTTGCCTCCCCTCTTTTTTCCACTT
TTCTTTTTCCCCCCCCCCCCCTTCTTTTCTCCTC
TGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTACTCAAGTCTTTGGAGACACAGGGATTTTAT
TGGGTTCTCATGTACCTCGGGAGAGTGTTTGTGCTCCATTAAAAAGGTAC
TCACATTCACTATTTTGATGCCTTTCTTTCTATTTGAGTGTGCTTTGTAC
TTTTGTCTGCTATGTGTTGTGTTCTGTGTTCTTTGTTACTAACTCTAGGT
TTCTTACCATACTTGGAAAATGAAAGTCAGTTTGAAAACCTTTCATATTT
ATACTTGTTCTCTGTATAGAAACTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTTCTCTCTCTCTCCCCCTCTCTTTGCAATTTCATATATTGTGTTC
CTCCGCGCACCCATGTTTGTTCTTAAAATATTCCTGACCCACTTTCTTTC
CCTCTCTCTTTACCTTCACCTCTTTCCCCCGTTATCCTCCTTTTTTCTTA
TCAATCCCCTTCCTCTATATTTCTCCCTTCTCATTTTTTTAACATAATAA
CCTAATATATACTTTTTTCTTTTTCTTTTATTCTCCCACCACCCTCTTTC
TTTTAACTCTTCTCTTCACACATCTTTCCTCATCTTTCTCTACTCATTTC
TTCTTCCTCCCCTTCACTCTTTCACCCCTCCCCCTCTCCCCTCCCTTTCT
TTATCCTTCTTCTTCTTCATCTCCTTCTCCTTTCTTTTGTCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_i06.g1 MSMg01no074_i06.g1 CHROMAT_FILE:
MSMg01no074_i06.g1 PHD_FILE: MSMg01no074_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:54 2005
         (141 letters)



>mm_chrX_53525131_53525671
          Length = 541

 Score =  149 bits (77), Expect = 7e-41
 Identities = 122/137 (89%), Gaps = 2/137 (1%)
 Strand = Plus / Minus

                                                                       
Query: 6   tttgtgctccattaaaaaggtactcacattcactattttgatgcctttctttctatttga 65
           ||||| ||||||| ||||||| || |||||||| | ||||||||||  || |||||||||
Sbjct: 341 tttgttctccatttaaaaggtccttacattcacaaatttgatgcctgcctgtctatttga 282

                                                                       
Query: 66  gtgtgctttgtacttttgtctgctatgtgttgtgttctgtgttctttgttactaactcta 125
           |||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||
Sbjct: 281 gtgtgctttgtacttttgtctgctgtgtgttgtgttctgtgtccttggttactaactcta 222

                            
Query: 126 -ggtttcttaccatact 141
            |||  |||||||||||
Sbjct: 221 cggtc-cttaccatact 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 541
Length adjustment: 8
Effective length of query: 133
Effective length of database: 533
Effective search space:    70889
Effective search space used:    70889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)