BAC Information

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BAC

Clone NameMSMg01-075D24
ChromosomeX (Build37)
Map Location 163,691,819 - 163,692,227
singlet/doubletsinglet
Overlap geneTlr8
Upstream geneGpm6b, Ofd1, Trappc2, Rab9, LOC100040795, A630018P17Rik, Egfl6, LOC100041912, LOC641660, LOC667791, EG667794, LOC100040850, LOC627268, Tmsb4x
Downstream geneTlr7, Prps2, EG627311, Frmpd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075D24.T7 (MSMg01no075_d24.b1)MSMg01-075D24.TJ (MSMg01no075_d24.g1)
ACCAG298113AG298114
length675646
length of high quality
(start - end)
436 (57 - 492)286 (57 - 342)
definitionCHROMAT_FILE: MSMg01no075_d24.b1 PHD_FILE: MSMg01no075_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:52 2005CHROMAT_FILE: MSMg01no075_d24.g1 PHD_FILE: MSMg01no075_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATTGNNNNNNATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCAAACATGCTTCCACAGTGAACATGCATTATCATT
ATCAAAACAGGGATCAGACAATTCCACAGATGATAGAAACAACTGGGTCT
ATCCTGAGAAAAGAATAATTTGGGCTTACTTCTTTTATTTGTTTTATGCC
AAAACAGTTCTGGTTGGGTAAAATATTTTAATGTGGAAAAAGGAAATCAT
AAATTTAATAGGAAAAAAAAGTTAGGAAAATTGTTGTGTCTAGAATTGAA
GTGTGGAAGTCTTTCCTAGACCATACAAATAAGTCAAATTCCCTTGTTGG
GTTGCTTATAGCATCAAGTATTTTTTTTTAAAATCACAGGTGAAATCTTG
TAATATTATTGTATGTGACTCATGTTTATCTACACAGAAAACGATAAAAT
AACCAATAAAATGGAGTCCCCAGACCATTTACTGGCTGACACATGCAGGA
AAGTATATAAAACGACCTTCAGACCTGACAATGTTCAGATTGGCATACAT
GCAGACTGAGATATGCATATGGCCCTAGATAATTATAACATTTCCCACAG
CATCTTACAAGTTTCTTACATTCCTGAGAGTCTACAATGCTTCATGTTCT
CAAGCACTATCTTATGATATTGTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCCCTTCACTGTGGCATCAAGCCTTCACAGATCCAAGGGGCTCCC
TCCCCTCCCACTGATGCCAGGTAAAGCCCCTTCAGCTCCTTCAGTCCTTC
CCCTAACTCCTCCATTTGGGTCCCTGTGCTCAGTCCCAGTGGTTGGCGGT
GAGCATCTGCATCTGTGTTTTGTTTTTAAAACAGGGTCTTTGCAACCTCA
GAACTCACTGTGCATCCAGGGTGGCCTCAGATTCAGTTGATCTCTTCTTT
CAATCTACTGAATGCTAGGATTCCAAGGGTGATCTACAGTGCCTATTTTG
AAAGCTCCTCCCAGAGAGTGAGGATTGGTGAGATGGTTCATTATGTTAAA
GAAGGCCTGCGTAAAAACCATGGGGCATACTTAAAGGCATAATGAAAAAT
CTTCTACTTCTACTACATGGCGTGCTCATGTCTATATGTGATTAACAGTT
TTAATAGAAGTTCTCATTTTTACAAGGGGTTTAAAATACCCCCCAAATCA
CGATTACCAATCGAAGATTATCTCCCGTTTACTAGCCTCCTCTGAAATGC
TTGCCCTCAACTTTGTACATTTACACCCTGTTTTTAATTTTTTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_d24.b1 MSMg01no075_d24.b1 CHROMAT_FILE:
MSMg01no075_d24.b1 PHD_FILE: MSMg01no075_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:52 2005
         (436 letters)



>mm_chrX_163691593_163692427
          Length = 835

 Score =  785 bits (406), Expect = 0.0
 Identities = 409/410 (99%), Gaps = 1/410 (0%)
 Strand = Plus / Minus

                                                                       
Query: 27  tgaacatgcattatcattatcaaaacagggatcagacaattccacagatgatagaaacaa 86
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tgaacatgcattatcattatcaaaacagggatcagacaattccacagatgatagaaacaa 576

                                                                       
Query: 87  ctgggtctatcctgagaaaagaataatttgggcttacttcttttatttgttttatgccaa 146
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ctgggtctatcctgagaaaagaataatttgggcttacttcttttatttgttttatgccaa 516

                                                                       
Query: 147 aacagttctggttgggtaaaatattttaatgtggaaaaaggaaatcataaatttaatagg 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 aacagttctggttgggtaaaatattttaatgtggaaaaaggaaatcataaatttaatagg 456

                                                                       
Query: 207 aaaaaaaagttaggaaaattgttgtgtctagaattgaagtgtggaagtctttcctagacc 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aaaaaaaagttaggaaaattgttgtgtctagaattgaagtgtggaagtctttcctagacc 396

                                                                       
Query: 267 atacaaataagtcaaattcccttgttgggttgcttatagcatcaagtatttttttttaaa 326
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 395 atacaaataagtcaaattcccttgttgggttgcttatagcatcaagtatttttttt-aaa 337

                                                                       
Query: 327 atcacaggtgaaatcttgtaatattattgtatgtgactcatgtttatctacacagaaaac 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 atcacaggtgaaatcttgtaatattattgtatgtgactcatgtttatctacacagaaaac 277

                                                             
Query: 387 gataaaataaccaataaaatggagtccccagaccatttactggctgacac 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gataaaataaccaataaaatggagtccccagaccatttactggctgacac 227


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 835
Length adjustment: 9
Effective length of query: 427
Effective length of database: 826
Effective search space:   352702
Effective search space used:   352702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)