BAC Information

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BAC

Clone NameMSMg01-075F24
ChromosomeX (Build37)
Map Location 55,332,444 - 55,332,867
singlet/doubletsinglet
Overlap genenone
Upstream geneVgll1, Cd40lg, Arhgef6, Rbmx, Snord61, Gm364, Gpr101, Aldoa-ps, EG666441, LOC666447, Zic3
Downstream geneLOC631581, LOC631621, 4930550L24Rik, Fgf13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075F24.T7 (MSMg01no075_f24.b1)MSMg01-075F24.TJ (MSMg01no075_f24.g1)
ACCAG298207AG298208
length678685
length of high quality
(start - end)
422 (75 - 496)---
definitionCHROMAT_FILE: MSMg01no075_f24.b1 PHD_FILE: MSMg01no075_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:01 2005CHROMAT_FILE: MSMg01no075_f24.g1 PHD_FILE: MSMg01no075_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTTTNNNCTATCATAATTGCGGCGCTATACGACTCCTATATCCAGAGAT
CCGCGGAATTCAATAACATAGCGCTACAAAGCCTGAAGCATGGTAGATGT
CCATTGAAACTTTCTCTCATTCATACTAACTTTGTGACTTAGTGTGATTT
TACTAGTTATTTCTTTGTGGACTTTGTTTTTTGTACTGTTTTGTTTGAGA
CATGGTCTCTGTGGCCCAGCCTGGTCTTGAACTTGTTATGTAGCTAAGAT
GGCCTTGACTCCCACTCTTGATTCTCTTGCCTGTACCTCCCAACTGCTGG
AATGGCAGCTGAGTGTTTTCACATCTATCCCAATCAATACAATTTTAAAG
ATTTCAATGTAATAACCAGAATATTAATGAAAAAGGATAAAATATATTAC
TTCACTGTTAAAAAAGAAATTTTCTGGATATTACCTTATGGTAGTTTATT
ACAATCTTTTGGATTTTTTTTTAGATAGAACTCTGTAGCCCTGGCTGTCC
TGGAACTCACTCCCTCTACTAAGCTGAACTCATACTTACAGATACACCTG
CCTATGCTTCTTTAGTACCTGGATTAAAGGGGCACCCCCACTGCCTGGCA
CCTTATGATGGTTTATAACTCAATAAATAAGAAGTTTTAGTTTCTTACCC
TAAAGTTGCATATATATGCATACATATT
TGGGCGCGCCTGGTGTCGACTTTATGCGACCTATAGAAGGTCCTCGCAAC
TCCCGCTAGTCAGGGGTAACAGTGTGAGGAACAGGAAGATCGCAAGATCA
GTAAGCCTTTCTAAACACATCATGATCAGGCGGTCAACAGACCACAAAGA
GCCTCACCACACTTAGCAGATTACCAAGCCAGAGCTTCAGATATAACACT
ACAATGTTTCACAACAACTTATACCGGACTTTGGACATATTCAACGTACA
GATGTACGATGGAGGAGAAGAGCACTCAAGCCATACCGAGTCCAACGTCT
AGGATACCTAGCCCTCCCCATGACCTTTGATCTTACAACATGTTTTTTTA
AGCACCCCCCCCGCGCGCTCTCTCCCCCCTGGCTGGGGCTACCGGATCGG
CTGACGACAACATCCCCCCTGGACCTCGTTGCCTCTGATACCACTCTCTC
CTAGCCACAGAACCGATCCCATCCCTCCCTATGGCCCCACCTGTCCCCAA
AACCCAACACTTCCCCTTCCCCCCCCCCTCCCCACTTTACCGCCCGCACC
ATCTTTTCACCCCGCTCATTCTGCCATTTCCGTTTCCCTTCCTCCGTCCC
ATCCCTTCCCCCCCCACTCGCCTCATACCTCCAGCCCCCGTCCATTCACC
CCTCCCCCCATCCATCCTTCCCCTATATCCGACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_f24.b1 MSMg01no075_f24.b1 CHROMAT_FILE:
MSMg01no075_f24.b1 PHD_FILE: MSMg01no075_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:01 2005
         (422 letters)



>mm_chrX_55332244_55333065
          Length = 822

 Score =  774 bits (400), Expect = 0.0
 Identities = 418/424 (98%), Gaps = 2/424 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacaaagcctgaagcatggtagatgtccattgaaactttctctcattcatactaactttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacaaagcctgaagcatggtagatgtccattgaaactttctctcattcatactaactttg 260

                                                                       
Query: 61  tgacttagtgtgattttactagttatttctttgtggactttgttttttgtactgttttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgacttagtgtgattttactagttatttctttgtggactttgttttttgtactgttttgt 320

                                                                       
Query: 121 ttgagacatggtctctgtggcccagcctggtcttgaacttgttatgtagctaagatggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgagacatggtctctgtggcccagcctggtcttgaacttgttatgtagctaagatggcc 380

                                                                       
Query: 181 ttgactcccactcttgattctcttgcctgtacctcccaactgctggaatggcagctgagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgactcccactcttgattctcttgcctgtacctcccaactgctggaatggcagctgagt 440

                                                                       
Query: 241 gttttcacatctatcccaatcaatacaattttaaagatttcaatgtaataaccagaatat 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctttcacatctatcccaatcaatacaattttaaagatttcaatgtaataaccagaatat 500

                                                                       
Query: 301 taatgaaaaa-ggataaaatatattacttcactgttaaaaaagaaattttctggatatta 359
           |||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 501 taatgaaaaaaggataaaatatattacttcactgttaaaaaagaaagtttctagatatta 560

                                                                       
Query: 360 ccttatggtagtttattacaatcttttggattttttttt-agatagaactctgtagccct 418
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 561 ccttatggtagtttattacaatcttttggattttttttggagatagaactctgtagccct 620

               
Query: 419 ggct 422
           ||||
Sbjct: 621 ggct 624


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)