BAC Information

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BAC

Clone NameMSMg01-076G06
ChromosomeX (Build37)
Map Location 48,560,177 - 48,685,377
singlet/doubletdoublet
Overlap geneLOC665866, LOC385356
Upstream geneEG665816, Olfr1324, LOC100041788, 6720401G13Rik, 2610018G03Rik, LOC100040422, Rap2c, LOC385355, Mbnl3
Downstream geneHs6st2, Usp26, LOC100040479, LOC665888, 1700080O16Rik, LOC100040495, Gpc4, Gpc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076G06.T7 (MSMg01no076_g06.b1)MSMg01-076G06.TJ (MSMg01no076_g06.g1)
ACCAG298980AG298981
length720716
length of high quality
(start - end)
490 (61 - 550)442 (73 - 514)
definitionCHROMAT_FILE: MSMg01no076_g06.b1 PHD_FILE: MSMg01no076_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:21 2005CHROMAT_FILE: MSMg01no076_g06.g1 PHD_FILE: MSMg01no076_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,560,177 - 48,560,666)(48,684,940 - 48,685,377)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTTACGCAAGAAATCAATCTCTGTGTGTTAAATGCGAAA
TAATCAGAGTACGACAGCAATGGTTAGAAGACTGGGCACAAACTGCCCCT
CACATCATTAAAATCTGCAATGGCATTTGGCAAGAACTGGGAAAGTCACC
AGGACAATGTACAGGGATCATGTCAAACACTTGAGAGTTATGGCCAGGAT
CCTAACAAGTCAAAATAAGGACTTCCTGGTTACCTCATGAACTCCTAACT
ACTTCTCCCACGCCTTCTTTCATACTTGCCAAAGTCCCTGCACTACTGTA
AAAAAAAAAAAGTCAAACTTGTCTGGCATATAGGAAGTGGTTTTGCAAGT
CCACGAGCCACTACCAAACTAAAGAGGTGTTGGTTACTTCGAGAGACTGG
AAGACAGGCAAGGCTGTATAACTTTATGCCCAGTGACCCAACAAATGAGG
AGCTGTCATGTCAGTGACTCAACAAAAGGAGTCTTTATACTAAACTTGGG
CAACACGGGTCCCTCACCTCTGTCCACCACTGCAATCCAAGACTCCTGCG
GGGTCCACAGGTTTTCCTAATAACCACCCACACAGACAGGCCCACTTTCA
CTGTTGTGGAGCTGCTAGAACAATTATTTTCCTTAGGAATGTGCCGGACA
CTTCAAGGAATGTTCCCCTC
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTAGAATCAGTAATTATGCTTCTTTATT
TGTTCTTAATTGTAAATTGAGCTTGTGTTGGATGATCTGCATAGACATTT
ACCTCAGTAAGTTATTGTGAATTCAAATCTTTGAATTGGAAAATCTGTTG
GGTGAGTGGAGTACTCAGGACAGACCTGGTCTCCTCTCACTTTTCTACCT
TTTTTTCTTTGTCAAATAAAACCAAGGTTTTACATGCTAGTTGGTTGTAG
TGGATTTTATTAGCTTCCTTTGCTCAGGTGTCTCTAGTTGTCTGCGGCTG
ACCTCATAAAGGGTCTGTTATCATGTAAGACTACCAGACAACAAGGAATA
TCATGAGTATCATGTGTCTATAGGCACACACCTCTTGGCAATACTCACAA
ATGGCTCCCAAGAAGCCACATTCAGGTTCTAAACTTCATGAGACATGATG
CAGCATGTTCTTCTGTAGGTCATGCTGAAAATACTGATGATATAGTCTGA
CACCTGTCAGGCTTGTTTTGTTTGCTTTGCCTTACTAGCCTTTTTGCTTG
CATTTTGTGCGTTCCTGATTTTTTTATGTTTATATGCCCTGTGACTTCGT
CCTTCTCTTTTTCTCTCCTCTTCTTTTTCCCCTTTTTCACCCTCATCCCT
CCCTTATTTTCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_g06.b1 MSMg01no076_g06.b1 CHROMAT_FILE:
MSMg01no076_g06.b1 PHD_FILE: MSMg01no076_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:21 2005
         (490 letters)



>mm_chrX_48559977_48560866
          Length = 890

 Score =  909 bits (470), Expect = 0.0
 Identities = 485/490 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttacgcaagaaatcaatctctgtgtgttaaatgcgaaataatcagagtacgacagcaa 60
           ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 ttttaggcaagaaatcaatctctgtgtgttaaatgcaaaataatcagagtacgacagcaa 260

                                                                       
Query: 61  tggttagaagactgggcacaaactgcccctcacatcattaaaatctgcaatggcatttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggttagaagactgggcacaaactgcccctcacatcattaaaatctgcaatggcatttgg 320

                                                                       
Query: 121 caagaactgggaaagtcaccaggacaatgtacagggatcatgtcaaacacttgagagtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagaactgggaaagtcaccaggacaatgtacagggatcatgtcaaacacttgagagtta 380

                                                                       
Query: 181 tggccaggatcctaacaagtcaaaataaggacttcctggttacctcatgaactcctaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggccaggatcctaacaagtcaaaataaggacttcctggttacctcatgaactcctaact 440

                                                                       
Query: 241 acttctcccacgccttctttcatacttgccaaagtccctgcactactgtaaaaaaaaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acttctcccacgccttctttcatacttgccaaagtccctgcactactgtaaaaaaaaaaa 500

                                                                       
Query: 301 agtcaaacttgtctggcatataggaagtggttttgcaagtccacgagccactaccaaact 360
           |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 501 agtcaaacttgtctggcatataggaagtggttttgccagtccacgagccaccaccaaact 560

                                                                       
Query: 361 aaagaggtgttggttacttcgagagactggaagacaggcaaggctgtataactttatgcc 420
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 561 aaagaggtgttggttacttcgagagactggaagacaggcaaggcagtataactttatgcc 620

                                                                       
Query: 421 cagtgacccaacaaatgaggagctgtcatgtcagtgactcaacaaaaggagtctttatac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagtgacccaacaaatgaggagctgtcatgtcagtgactcaacaaaaggagtctttatac 680

                     
Query: 481 taaacttggg 490
           ||||||||||
Sbjct: 681 taaacttggg 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no076_g06.g1 MSMg01no076_g06.g1 CHROMAT_FILE:
MSMg01no076_g06.g1 PHD_FILE: MSMg01no076_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:21 2005
         (442 letters)



>mm_chrX_48684740_48685577
          Length = 838

 Score =  737 bits (381), Expect = 0.0
 Identities = 426/443 (96%), Gaps = 6/443 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttag-aatcagtaattatgcttctttatttgttcttaattgtaaattgagcttgtgttgg 59
           |||| ||||||||||||||   ||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ttagaaatcagtaattatg---ctttatttgttcttaattgtaaattgagcttgtgttgg 582

                                                                       
Query: 60  atgatctgcatagacatttacctcagtaagttattgtgaattcaaatctttgaattggaa 119
           |||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 581 atgatcggcataggcatttacctcagtaagttattgtgagttcaaatctttgaattggaa 522

                                                                       
Query: 120 aatctgttgggtgagtggagtactcaggacagacctggtctcctctcacttttctacctt 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 521 aatctgttgggtgagtggagtactcaggacagacctggtctcctctcacttttctatctt 462

                                                                       
Query: 180 tttttctttgtcaaataaaaccaaggttttacatgctagttggttgtagtggattttatt 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 461 tttttctttgtcaaataaaaccaaggttttacatgctagttggttgtagtggattttagt 402

                                                                       
Query: 240 agcttcctttgctcaggtgtctctagttgtctgcggctgacctcataaagggtctgttat 299
           |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 401 agcttcctttgctcgggtgtctccagttgtctgcggctgacctcataaagggtctgttat 342

                                                                       
Query: 300 catgtaagactaccagacaacaaggaatatcatgagtatcatgtgtctataggcacacac 359
           ||| ||||||||||||||||||||||||||||||||||||  |||||||||||| || ||
Sbjct: 341 catataagactaccagacaacaaggaatatcatgagtatc--gtgtctataggcgcaaac 284

                                                                       
Query: 360 ctcttggcaatactcacaaatggctcccaagaagccacattcaggttctaaacttcatga 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ctcttggcaatactcacaaatggctcccaagaagccacattcaggttctaaacttcatga 224

                                  
Query: 420 gacatgatgcagcatgttcttct 442
           |||| ||||||||||||||||||
Sbjct: 223 gacaggatgcagcatgttcttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 838
Length adjustment: 9
Effective length of query: 433
Effective length of database: 829
Effective search space:   358957
Effective search space used:   358957
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)