BAC Information

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BAC

Clone NameMSMg01-079C05
ChromosomeX (Build37)
Map Location 6,044,989 - 6,045,560
singlet/doubletsinglet
Overlap geneShroom4
Upstream geneMycs, LOC668969, LOC668970, OTTMUSG00000016453, LOC627412, LOC436185, LOC668971, LOC100043936, LOC668972, Nudt11, LOC208428, AU022751, Nudt10, Bmp15
Downstream geneLOC100043937, Dgkk, Ccnb3, Akap4, Clcn5, Usp27x, 2010204K13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079C05.T7 (MSMg01no079_c05.b1)MSMg01-079C05.TJ (MSMg01no079_c05.g1)
ACCAG300297AG300298
length693693
length of high quality
(start - end)
575 (46 - 620)620 (74 - 693)
definitionCHROMAT_FILE: MSMg01no079_c05.b1 PHD_FILE: MSMg01no079_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:40 2005CHROMAT_FILE: MSMg01no079_c05.g1 PHD_FILE: MSMg01no079_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATCTCCCCTCCCCAGTGTGGAGGATGTATGAGTGCATTTGTTAA
GCAGGTGAATGTGTGCTGGTCTGTAGCCGCACTAGCATGATGACTGTCGT
GCTTCAGCTATGTAAGGGATGGAGGGGAAAGAAATCATTAACAAGGTTCT
TTGTTGTGCTTGACCTCTTGGAAGAAATAATGGAACAGGATTGTAGGCCC
TGACTTGACCTGACAGTTTTTGTGTTAGACTTTTTGTTGTTGTACAGATA
GTTTACCATAAAATAGGATTCAGAGTTAGCAGTTTTTCTTCGTTGGAAGA
CAGTAATTTAAATGTATTTTCTCACATAAAAGACTTTAAGAATTATCTTA
GGCTTTCAGTAGTTTTTCCATTTTCATGACTTAGAAATAAGCTTTGAAAT
GCAGGCCCCTGGGGAAGGCAGGCTTTCTTTTCCTCTCTATGTATAAAGGA
AAGGTAAGACAGGAGAATCATGGCGTTTCAGGGGAAAGCCTTCTCAATAG
GCCATATCAGTCATCCCTTCAGGCCGAGAGAGTCATTGCAATCTGGTAAA
GGGCTGATCTTTGCAAAGTCAAGGCTGGTGGCTGCCTTGCTGCTCCAAAA
CAGACAGGACCCAGAGGAAAGATGCACACATACGTTCAGGCAA
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAATGGCAGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATC
CGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACTGGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTATACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGACAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGGAACTCACACAATATGTACTCATTGATAAGTG
GATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_c05.b1 MSMg01no079_c05.b1 CHROMAT_FILE:
MSMg01no079_c05.b1 PHD_FILE: MSMg01no079_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:40 2005
         (575 letters)



>mm_chrX_6044786_6045760
          Length = 975

 Score = 1085 bits (561), Expect = 0.0
 Identities = 570/573 (99%), Gaps = 2/573 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccatctcccctccccagtgtggaggatgtatgagtgcatttgttaagcaggtga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccatctcccctccccagtgtggaggatgtatgagtgcatttgttaagcaggtga 263

                                                                       
Query: 64  atgtgtgctggtctgtagccgcactagcatgatgactgtcgtgcttcagctatgtaaggg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atgtgtgctggtctgtagccgcactagcatgatgactgtcgtgcttcagctatgtaaggg 323

                                                                       
Query: 124 atggaggggaaagaaatcattaacaaggttctttgttgtgcttgacctcttggaagaaat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atggaggggaaagaaatcattaacaaggttctttgttgtgcttgacctcttggaagaaat 383

                                                                       
Query: 184 aatggaacaggattgtaggccctgacttgacctgacagtttttgtgttagactttttgtt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aatggaacaggattgtaggccctgacttgacctgacagtttttgtgttagactttttgtt 443

                                                                       
Query: 244 gttgtacagatagtttaccataaaataggattcagagttagcagtttttcttcgttggaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gttgtacagatagtttaccataaaataggattcagagttagcagtttttcttcgttggaa 503

                                                                       
Query: 304 gacagtaatttaaatgtattttctcacataaaagactttaagaattatcttaggctttca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gacagtaatttaaatgtattttctcacataaaagactttaagaattatcttaggctttca 563

                                                                       
Query: 364 gtagtttttccattttcatgacttagaaataagctttgaaatgcaggcccctggggaagg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtagtttttccattttcatgacttagaaataagctttgaaatgcaggcccctggggaagg 623

                                                                       
Query: 424 caggctttcttttcctctctatgtataaaggaaaggtaagacaggagaatcatggcgttt 483
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 624 caggctttcttttcctctctatgtataaaggaaaggtaagacaggagaatcaaggcgttt 683

                                                                       
Query: 484 caggggaaagccttctcaataggccatatcagtcatccc-ttcaggccgagagagtcatt 542
           ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 684 caggggaaagccttctcaataggccatatcagtcatcccctt-aggccgagagagtcatt 742

                                            
Query: 543 gcaatctggtaaagggctgatctttgcaaagtc 575
           |||||||||||||||||||||||||||||||||
Sbjct: 743 gcaatctggtaaagggctgatctttgcaaagtc 775


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)