XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
CTAAATTTCCTGAGGCTGGGAAAGTAGTAGTCACCTTTTCACCTGAAGAC
AATTTCTGAAACCCTTTATCTGTTATGGAAAGTCCTAATGAGCCCATTTG
TGATGGGGTAAATTTCACAGACTCCTGTCCATAGAGATGGAAGTTTTGAG
AATTTCCTGGGAAAATGTTAGTGGTCCCAGTATCACCCGGTCATATATGG
AAGGACCCAAAACACCTTGGACAAATGTTAAAAGGTCAGTGTCTCTTGGG
CAGATGCTAAAGCTTCTAGAGAACAAGGCAGATTCTGAAGATTTGTAAGC
ATCTTGTGAAGATGCCAAAGGTCTTGATGTCTCTAGGGTAAATTGGGAAG
GATCCAGATTCCCTTCCATAAGAGCCTTAATTCCTAGAATATATATTCAG
CAGGTAGTGATGGTTCCATTGTCCCTTCGGTAGATGATGGTGTTTCTCAA
GCAACTTGAGTAGAACCTGATGTTCCTAGAATTCCTTCTGAAAATTAAAA
AATTCCTAAACTTCCTAGAGCAGATGATGAATAAGCTAAAGCCTCCTTGG
CTACAAAAGGGTCCTAGATATACTTGGGAAGATATGGACATTTCTGGATA
CACTTGATCATGATTTGGATGTCCTAGATATTCTTGTGATGGTGTCAAAA
TTCACA

AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACC
TGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACA
ACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTC
AGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCC
ATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGG
CGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACC
TCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACAT
GCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAA
GAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACAT
CTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAAT
TCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACA
CATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTA
GCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTAAACACAC

Query= MSMg01no080_a17.b1 MSMg01no080_a17.b1 CHROMAT_FILE:
MSMg01no080_a17.b1 PHD_FILE: MSMg01no080_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:50 2005
         (668 letters)



>mm_chrX_33294822_33295889
          Length = 1068

 Score = 1255 bits (649), Expect = 0.0
 Identities = 661/665 (99%), Gaps = 1/665 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttc-taaatttcctgaggctgggaaagtagtagtcaccttttcacctgaagaca 63
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcttcataaatttcctgaggctgggaaagtagtagtcaccttttcacctgaagaca 263

                                                                       
Query: 64  atttctgaaaccctttatctgttatggaaagtcctaatgagcccatttgtgatggggtaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atttctgaaaccctttatctgttatggaaagtcctaatgagcccatttgtgatggggtaa 323

                                                                       
Query: 124 atttcacagactcctgtccatagagatggaagttttgagaatttcctgggaaaatgttag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atttcacagactcctgtccatagagatggaagttttgagaatttcctgggaaaatgttag 383

                                                                       
Query: 184 tggtcccagtatcacccggtcatatatggaaggacccaaaacaccttggacaaatgttaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tggtcccagtatcacccggtcatatatggaaggacccaaaacaccttggacaaatgttaa 443

                                                                       
Query: 244 aaggtcagtgtctcttgggcagatgctaaagcttctagagaacaaggcagattctgaaga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaggtcagtgtctcttgggcagatgctaaagcttctagagaacaaggcagattctgaaga 503

                                                                       
Query: 304 tttgtaagcatcttgtgaagatgccaaaggtcttgatgtctctagggtaaattgggaagg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tttgtaagcatcttgtgaagatgccaaaggtcttgatgtctctagggtaaattgggaagg 563

                                                                       
Query: 364 atccagattcccttccataagagccttaattcctagaatatatattcagcaggtagtgat 423
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 564 atccagattcccttccataagagccttaattcctagaatatatattcagcaggtggtgat 623

                                                                       
Query: 424 ggttccattgtcccttcggtagatgatggtgtttctcaagcaacttgagtagaacctgat 483
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 624 ggttccattgtcccttcggtagatgatggtgtttctcaagcaccttgagtagaacctaat 683

                                                                       
Query: 484 gttcctagaattccttctgaaaattaaaaaattcctaaacttcctagagcagatgatgaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gttcctagaattccttctgaaaattaaaaaattcctaaacttcctagagcagatgatgaa 743

                                                                       
Query: 544 taagctaaagcctccttggctacaaaagggtcctagatatacttgggaagatatggacat 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 taagctaaagcctccttggctacaaaagggtcctagatatacttgggaagatatggacat 803

                                                                       
Query: 604 ttctggatacacttgatcatgatttggatgtcctagatattcttgtgatggtgtcaaaat 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ttctggatacacttgatcatgatttggatgtcctagatattcttgtgatggtgtcaaaat 863

                
Query: 664 tcaca 668
           |||||
Sbjct: 864 tcaca 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)