BAC Information

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BAC

Clone NameMSMg01-080C14
ChromosomeX (Build37)
Map Location 82,848,482 - 82,848,923
singlet/doubletsinglet
Overlap geneMap3k7ip3
Upstream geneDmd, LOC100042296, LOC669833, 1600014K23Rik
Downstream geneGyk, LOC100042350, LOC629340, LOC100041562, 5430427O19Rik, 1700072E05Rik, Nr0b1, CN716893, LOC667841, LOC236427, EG667852, EG436212, Gm41, EG629374, EG637027
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080C14.T7 (MSMg01no080_c14.b1)MSMg01-080C14.TJ (MSMg01no080_c14.g1)
ACCAG301070AG301071
length737704
length of high quality
(start - end)
104 (41 - 144)441 (68 - 508)
definitionCHROMAT_FILE: MSMg01no080_c14.b1 PHD_FILE: MSMg01no080_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:59 2005CHROMAT_FILE: MSMg01no080_c14.g1 PHD_FILE: MSMg01no080_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AATTCCTACCTCTTGTGAATGAACACAGAACAGAAAGTGTCTCTGTAGGA
GGATGTGGAGTTCTTTGTTTTTGTGCCTTAGAGTGGTATATATGGGTCAT
ATGGTAGTCCTAATTTTCAGTCTTATAAGAACCCTCTACACTGATTTCTA
TAGCACCTGTCCTGTTTTTATATTCTCATCAAGAGCAGGATAAAAGTTTT
TCTTTCCCCATATCCTTATCAGCTTCCGTTGCCTTTTGTTCTCCTGTTGG
TATGAACATTCTGTTTGTTGCTTTTAACGTTCCCTTCCCCGATTTCTAAC
TTGTAACATCTCTTTTCTTGAGATATCTGTACATTTTTCTATATATTCCC
CCAGATTTTTCCCCCCTTCCCTTTGTTCGCGTTTTTTTCATTGTTTTTAT
TCCCTCCCTATCTTTCTCCGTTTCATCATTATTTCTACTGTCACCCCTCC
ATCATACCTTTTTTACTTCCCTTGTTATTTTTCGTTTTACTTTCCCTTTC
TACCCCCCTCCTTTCTTTCTTTACCCCTTTTTTTTGCTTTTTTCATCTTT
TCTTCCCTTTCCTTTCCCGTTTTTTTTCCCTTTGTTTTTTTTTTCCCCTC
CCCCTCTCTTTCCCCCCCTTTTTTTTTTTTCCCCCTTATCAATTCCCCCC
TTATTTCCTTTTTTTTTTTTTTTCCTCTCCCCTTTTT
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGAGAATATACTTAGGGTAAAATCCTAACTCAA
ATCTAAAACCTGCATTCTACAAAGTCTGTTTTACACACTGTCCCTGGTAG
ATATCTTTTACAATTCCAGTGTACATACTCAGAGATGACTTTCTGTCTCT
CTATGGCTGGGACAAAAATGAGAGTGACCTTTCATTGGTTATTCATCCAA
ACAGGGAGTTCTGGGCATGTGGGGAGGTAGAACGCTGGAAGCAAAGAAAG
AATTCTTGAACAAAGTAATTAGTTGATTTTACAGGTTATATGAACTGCAG
AGCTAGAGAAGATGCCCTTTTGTACTGGGATTCTTCATGTCTTTTTTTTT
TCCAGCGCTCATATTTTATTCACTATTCTATTAAAAACAGATTTTTCATA
CACTCTATTCTGATCAAAGTTTCCCATCCCCCAATTCCTTTTCCCCTCCC
CATCCAGCACAATCTATAACCCTTTAATATTCTCATTAGAACACGAATAG
GTAACTTGAAAAAAAAAGCAAGAAAAAAAGAGCCTAAGAACAGGTACGAG
AAACATACAGATGTACACTCACTTGCACATATAGCCATAAGAACACTAAA
CCAGAAACCGCATCATGTAAGTAACAGCCCCGCCAGGTTTATGCATATAT
ACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_c14.g1 MSMg01no080_c14.g1 CHROMAT_FILE:
MSMg01no080_c14.g1 PHD_FILE: MSMg01no080_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:59 2005
         (441 letters)



>mm_chrX_82848365_82849206
          Length = 842

 Score =  793 bits (410), Expect = 0.0
 Identities = 434/442 (98%), Gaps = 1/442 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagaatatacttagggtaaaatcctaactcaaatctaaaacctgcattctacaaagtct 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 559 agagaatatacttagggtaaaatcctaactcaaatctaaaatctgcattctacaaagtct 500

                                                                       
Query: 61  gttttacacactgtccctggtagatatcttttacaattccagtgtacatactcagagatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gttttacacactgtccctggtagatatcttttacaattccagtgtacatactcagagatg 440

                                                                       
Query: 121 actttctgtctctctatggctgggacaaaaatgagagtgacctttcattggttattcatc 180
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 439 actttctgtctctctatggctgggacaaaaatgagagtgaactttcattggttactcatc 380

                                                                       
Query: 181 caaacagggagttctgggcatgtggggaggtagaacgctggaagcaaagaaagaattctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 caaacagggagttctgggcatgtggggaggtagaacgctggaagcaaagaaagaattctt 320

                                                                       
Query: 241 gaacaaagtaattagttgattttacaggttatatgaactgcagagctagagaagatgccc 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 319 gaacaaagtaattagttgattttacaggttatatgaactgcagcgctagagaagatgccc 260

                                                                       
Query: 301 ttttgtactgggattcttcatgtc-ttttttttttccagcgctcatattttattcactat 359
           |||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||
Sbjct: 259 ttttgtactgggattcttcatgtctttttttttttccagtgcttatattttattcactat 200

                                                                       
Query: 360 tctattaaaaacagatttttcatacactctattctgatcaaagtttcccatcccccaatt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tctattaaaaacagatttttcatacactctattctgatcaaagtttcccatcccccaatt 140

                                 
Query: 420 ccttttcccctccccatccagc 441
           ||||| ||||||||||||||||
Sbjct: 139 cctttccccctccccatccagc 118


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 842
Length adjustment: 9
Effective length of query: 432
Effective length of database: 833
Effective search space:   359856
Effective search space used:   359856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)