Query= MSMg01no080_d19.b1 MSMg01no080_d19.b1 CHROMAT_FILE:
MSMg01no080_d19.b1 PHD_FILE: MSMg01no080_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:04 2005
(499 letters)
>mm_chrX_11126899_11127798
Length = 900
Score = 913 bits (472), Expect = 0.0
Identities = 493/500 (98%), Gaps = 1/500 (0%)
Strand = Plus / Minus
Query: 1 aagccctcatctcccctctgca-acatggcagggtggggtgggggcggaatacccaggga 59
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 700 aagccctcatctcccctctgcagacatggcagggtggggtgggggcggaatacccaggga 641
Query: 60 gcacttgaacagcttccatggccacagaaccggcccgcctgtttctatggaaacaggcgc 119
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 640 gcacttgaacagcttccatggccacggaaccggcccgcctgtttctatggaaacaggcgc 581
Query: 120 caagctaggagcctgctgctgggagccaagtccctggcggctgtcaggctcagctgctgg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 caagctaggagcctgctgctgggagccaagtccctggcggctgtcaggctcagctgctgg 521
Query: 180 ctgcccgctgggacctggaagtgcccttttccaaaacctattccttgctggctctgagtc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ctgcccgctgggacctggaagtgcccttttccaaaacctattccttgctggctctgagtc 461
Query: 240 agaggggtctcctggcattcactgtgcttggagtctggatagatgatgagagggaggaga 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 agaggggtctcctggcattcactgtgcttggagtctggatagatgatgagagggaggaga 401
Query: 300 agagaagagcgaataaaaatatttatgccttaacaaacactttgatgcctgaagattgtg 359
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 400 agagaagagcgaataaaaatatttatgccttaacaaacactttgatgtttgaagattgtg 341
Query: 360 tgtgcaaatgagaactgggaacatctttggtgaggggttgtttccaagcaaatctctgca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tgtgcaaatgagaactgggaacatctttggtgaggggttgtttccaagcaaatctctgca 281
Query: 420 agcacacatgtgctcataaagtacccccccacacacacacccaaaagctccctttctgtc 479
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 agcacacatgtgcttataaagtacccccccacacacacacccaaaagctccctttctgtc 221
Query: 480 tagatgggctcactttatta 499
|||||||| | |||||||||
Sbjct: 220 tagatgggtttactttatta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 900
Length adjustment: 10
Effective length of query: 489
Effective length of database: 890
Effective search space: 435210
Effective search space used: 435210
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_d19.g1 MSMg01no080_d19.g1 CHROMAT_FILE:
MSMg01no080_d19.g1 PHD_FILE: MSMg01no080_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:04 2005
(555 letters)
>mm_chrX_11050807_11051761
Length = 955
Score = 984 bits (509), Expect = 0.0
Identities = 530/537 (98%)
Strand = Plus / Plus
Query: 1 atctgaagccagctgaggcctgcctcagggcatgggagagagatctgcagggccaaatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctgaagccagctgaggcctgcctcagggcatgggagagagatctgcagggccaaatgt 260
Query: 61 ggaaaagactgctgaaatgtgcctgcaagatgcctcagcaggtgaagtcaaatgctacaa 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 ggaaaagactgctgaaatgtgcctgcgagatgcctcagcaggtgaagtcaaatgctacaa 320
Query: 121 agcctgatgacatgagttcgattcctagaactcatggaaggatggaagagaaaaattgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcctgatgacatgagttcgattcctagaactcatggaaggatggaagagaaaaattgac 380
Query: 181 tacacaaagttgtccctaaccacccaccttcatagccatacacatcacccatccgtccac 240
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 ttcacaaagttgtccctaaccacccaccttcatagccatacacatcacccatccatccac 440
Query: 241 aataataataaatagaattttaaggagaaaatggagaagacagaaacaggtatccagcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aataataataaatagaattttaaggagaaaatggagaagacagaaacaggtatccagcca 500
Query: 301 cctttttgggggtgaaaaaccattaaaatactccttctctggtgtctactactcaaatcc 360
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 501 cctttttgggggtgaaaaaccattaaagtactccttctctggtgtctattactcaaatcc 560
Query: 361 cattgtaaaacagaagcaaactgctgggcgtggtggtgcacgcctttaatcccagcactt 420
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cattgtaaaacagaaggaaactgctgggcgtggtggtgcacgcctttaatcccagcactt 620
Query: 421 gggaggcagaggcaggtggatttctgagttcgaggccaacctggtctacaaagtgagttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggaggcagaggcaggtggatttctgagttcgaggccaacctggtctacaaagtgagttc 680
Query: 481 caggacagccaaggctacacagagaaaccctgtctcaaggaaagaaagatagaaaga 537
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 681 caggacagccaaggctacacagagaaaccctgtctcaaggaaagaaagaaagaaaga 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
