BAC Information

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BAC

Clone NameMSMg01-080G23
ChromosomeX (Build37)
Map Location 143,083,395 - 143,278,537
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC623697, LOC623731, LOC237096, LOC100039558, EG666730
Downstream geneEG245663, Htr2c, Il13ra2, V1rb10, Lrch2, LOC100039462, LOC666789, LOC434863, EG623995
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080G23.T7 (MSMg01no080_g23.b1)MSMg01-080G23.TJ (MSMg01no080_g23.g1)
ACCAG301277AG301278
length712708
length of high quality
(start - end)
576 (38 - 613)410 (64 - 473)
definitionCHROMAT_FILE: MSMg01no080_g23.b1 PHD_FILE: MSMg01no080_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:20 2005CHROMAT_FILE: MSMg01no080_g23.g1 PHD_FILE: MSMg01no080_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,083,395 - 143,083,967)(143,278,128 - 143,278,537)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTCTTT
GTTATTCTCTTTCCCATTATTTTTATGGAATATATTTTTGGATATGACCA
GAGAAATATTTTAAAAACTGGAATTCATTAGCTGAATGTAAGGTAATAGT
ATTAATGGAAGGTTCTTTAATGAGGCATAGAAAAGGATAACCTAATGAGA
GTTGATAATTTTCACTTGGATGTGGTATGTTGGAGTCATGAAAAAATTTT
ATAAAGGCAAAATGGGATATAACGGCCTTGGAGTCAACGCTGGGTTGGTT
ATATTATTGATGTAAGAATCCTAAAAAAACAGATGGCACTGTAAAACTCA
GCCTTTACTTTTGCTTTTGCCCTTCATGCCAAAAATAAGGGGTAGGAGGA
GTGATTCCTGGGCCGTCAAGCTTAGGCTGAGACTGCAGTATTCATTTGCT
TAAATATAAGTCAAAGTGGCAGTTCCAGTTTCTCAGCCATCAAGTAGTCT
TTATGTGATCGCGCAGTAGTAATCCATTTCTCACACTCTGTGGAAAAGCA
ATGTAACGTGAAATCCCCTTCACAATTCATTTTTAGGATGACATTGACCA
CTGAGGTATCAACTCCAAAATTTGTTTTTGTGCAAACTAGAAAAGTTCCC
ATTTTCTTCAACAGTTTTCATTGCTGAAGTTTAACTTGGTGTTATCATTC
TAGATTGGCCTA
GTGTGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXACTATATATCCCAACATTTACTTTTTATGAAGGAGTT
ACACAGGTAATGTGTTTAGTATAGAGAAAGTGAGGTAATTTAATTGAGAA
CATATTGGTCTGTAAATTAACTTGAGGATAATTACTGTCCTCATAAATGT
GAAGTCATTAGTTCAAATTTGCTTGTTTGTTTGTAGGAGTCTTTTGTAGA
TTTCCGAATAAATGAATCAACCATATATGTTATGTATATGCTGTCAAATT
CATGATAAAGAATTTTTGAATTATAAATATGGCTTGTTGACTGGGTAATA
CAATTATCTTAGTCTGCTTATATTTCTTTTACTATATAGTGTTAGTTCAT
GAAATTTTTTTAGCATTTGTATTTTCTATTGTTTTTTGGAGACTTTCAGC
AGTAACATTATATTATCTGCAAGCACAGATAGATGCTTCCAGTTGCTTCT
TATACTAGTACTATACATCTAATGCAGAATCAGTGAGAATGCTTCACTAA
ATCTGACTCAGATGTTTAATAATTGATAAATATGCTGTCTCAGGTCAGAT
GATTACATTTATGAAAGTAACCCTTCATGTCCCACTTACTATATCAAAAA
ATTATTACTTTCCGAATCTACTGTGTTTTTAGGTATCTTTATAACCTGCT
AATGAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_g23.b1 MSMg01no080_g23.b1 CHROMAT_FILE:
MSMg01no080_g23.b1 PHD_FILE: MSMg01no080_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:20 2005
         (576 letters)



>mm_chrX_143083192_143084167
          Length = 976

 Score = 1038 bits (537), Expect = 0.0
 Identities = 564/573 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttgttattctctttcccattatttttatggaatatatttttggatatgacca 63
           |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttgttattctttttcccataatttttatggaatatatttttggatatgacca 263

                                                                       
Query: 64  gagaaatattttaaaaactggaattcattagctgaatgtaaggtaatagtattaatggaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gagaaatattttaaaaactggaattcattagctgaatgtaaggtaatagtattaatggaa 323

                                                                       
Query: 124 ggttctttaatgaggcatagaaaaggataacctaatgagagttgataattttcacttgga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggttctttaatgaggcatagaaaaggataacctaatgagagttgataattttcacttgga 383

                                                                       
Query: 184 tgtggtatgttggagtcatgaaaaaattttataaaggcaaaatgggatataacggccttg 243
           ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 384 tgtggtatgttggagtcatgacaaaattttataaaggcaaaatggaatataacggccttg 443

                                                                       
Query: 244 gagtcaacgctgggttggttatattattgatgtaagaatcctaaaaaaacagatggcact 303
           ||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 444 gagtcaaagctgggttggttatattattgatgtaagaatcctaaaggaacagatggcact 503

                                                                       
Query: 304 gtaaaactcagcctttacttttgcttttgcccttcatgccaaaaataaggggtaggagga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtaaaactcagcctttacttttgcttttgcccttcatgccaaaaataaggggtaggagga 563

                                                                       
Query: 364 gtgattcctgggccgtcaagcttaggctgagactgcagtattcatttgcttaaatataag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtgattcctgggccgtcaagcttaggctgagactgcagtattcatttgcttaaatataag 623

                                                                       
Query: 424 tcaaagtggcagttccagtttctcagccatcaagtagtctttatgtgatcgcgcagtagt 483
           |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 624 tcaaagtggcagttccagtttctcagccatcaagtagtctttatgtgatcacacagtagt 683

                                                                       
Query: 484 aatccatttctcacactctgtggaaaagcaatgtaacgtgaaatccccttcacaattcat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aatccatttctcacactctgtggaaaagcaatgtaacgtgaaatccccttcacaattcat 743

                                            
Query: 544 ttttaggatgacattgaccactgaggtatcaac 576
           |||||||||||||||||||||||||||||||||
Sbjct: 744 ttttaggatgacattgaccactgaggtatcaac 776


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no080_g23.g1 MSMg01no080_g23.g1 CHROMAT_FILE:
MSMg01no080_g23.g1 PHD_FILE: MSMg01no080_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:20 2005
         (410 letters)



>mm_chrX_143277928_143278737
          Length = 810

 Score =  770 bits (398), Expect = 0.0
 Identities = 407/410 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actatatatcccaacatttactttttatgaaggagttacacaggtaatgtgtttagtata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 actatatatcccaacatttactttttatgaaggagttacacaggtaatgtgtttagtata 551

                                                                       
Query: 61  gagaaagtgaggtaatttaattgagaacatattggtctgtaaattaacttgaggataatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gagaaagtgaggtaatttaattgagaacatattggtctgtaaattaacttgaggataatt 491

                                                                       
Query: 121 actgtcctcataaatgtgaagtcattagttcaaatttgcttgtttgtttgtaggagtctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 actgtcctcataaatgtgaagtcattagttcaaatttgcttgtttgtttgtaggagtctt 431

                                                                       
Query: 181 ttgtagatttccgaataaatgaatcaaccatatatgttatgtatatgctgtcaaattcat 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ttatagatttccgaataaatgaatcaaccatatatgttatgtatatgctgtcaaattcat 371

                                                                       
Query: 241 gataaagaatttttgaattataaatatggcttgttgactgggtaatacaattatcttagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gataaagaatttttgaattataaatatggcttgttgactgggtaatacaattatcttagt 311

                                                                       
Query: 301 ctgcttatatttcttttactatatagtgttagttcatgaaatttttttagcatttgtatt 360
           ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 310 ctgtttatatttcttttactatatagtgttagttcatgaaatttttttagtatttgtatt 251

                                                             
Query: 361 ttctattgttttttggagactttcagcagtaacattatattatctgcaag 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ttctattgttttttggagactttcagcagtaacattatattatctgcaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)