BAC Information

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BAC

Clone NameMSMg01-081A03
ChromosomeX (Build37)
Map Location 36,772,506 - 36,773,013
singlet/doubletsinglet
Overlap genenone
Upstream geneLamp2, LOC100040971, EG665352, LOC670495, Cul4b, Mcts1, C1galt1c1, EG665369, 6030498E09Rik, LOC547171, LOC670539, LOC100039700, 1700085A12Rik
Downstream geneLOC100039715, EG636756, EG636766, EG245391, LOC100039769
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081A03.T7 (MSMg01no081_a03.b1)MSMg01-081A03.TJ (MSMg01no081_a03.g1)
ACCAG301710AG301711
length698700
length of high quality
(start - end)
396 (41 - 436)508 (70 - 577)
definitionCHROMAT_FILE: MSMg01no081_a03.b1 PHD_FILE: MSMg01no081_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:04 2005CHROMAT_FILE: MSMg01no081_a03.g1 PHD_FILE: MSMg01no081_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTGATCTTCCCAAACTTTTATAATGAATGGGTGTTGGATTTTGTCTAATG
CTTTCTTCGTGTCTAAGGAGATGATCATGTGGTTTTTGTCTTTGAGTTTA
TTTATATAATGGATTATGTTGATGGATTTCTGTATATTAAACCATCCCTG
CATCCCTGGAAGAAAACCTACTTTGTCAGGATGGATGATTGTTTTAATGT
GTTCTTGGATTCGATTAGCAAAAATTTTATTGAGTATTTTTACATCGATA
TTCATAAGGGAAATTGGTATGAAGTTCTCTATCTTTGTTGGATCTTTCTG
TGGTTTAGGTATCAGAATAATTGTGGCTTCATAGAATGATTTGGGTAGAG
TACCTTCTACTTCTATTTTGTGGAATAGTTTGTGAAAAACTGGAATTAGA
TCTTCTTTGAAGGTCTGATAGAACTCTGCACTATACCCATCTCGTCCTGC
GCGCTCTTATTCATCTTTTTCCTCCTTTTTTTTGGGAGGGAGACTATTAC
TGATTGCTCTCTATTTCTTTACCCCACTTGTCACTGTTTACATTCTTAAC
TTGTTCCTGATCTTACCCCGGTACCCGGTACCCGTTTTAAAACCTGCTTT
TTCCTTCCCTCATTTCAGCTTCTTTGATATTTCCCCCTCTTTACTACC
TAATGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTGTTTAGTTCTGTATAATCACAAGAGATT
TCCAAACCTAAATTTGAAATAGTCTTTTAAAAGATTTGTTAATGTACATG
GGGAATTTTATAATTCATTGATATTTTACAGGGAATTATCATTTTCATTC
AAAACGCATCTACTGGGGGTTTTGCAAAGGATAATTGCAAGTGTTGTAGA
GAAAAGAATAAGGTATCCAAACTCTGTCTTAAAGAAGGTAGCAACAAAAT
ATTAAAATCATAGTATCTGAATAAATTAGAAAATTGATGCAATATTTATC
AAGGGTAATATGTAACTAAGTGCAAAGGGATTGCTAAGAGTTCAAAAAAG
AATATAATTTGTTTGCTTAGAGTTGAGGAGAAGATATGAGCCTCAACTGG
GATATTTTTTAAACCATGGCTTAGTAAAACTGTAATTAGGACAAAATTCT
GATACATTAAACAATTAATCTTGACCATAAAGCTGATGCAAAGGGGTTCA
TGCTGAATTTTAAGTACCAGAGAGCCTAAGACATCATCAGCGCTGTCCTA
CTGGGGTTTTGACACTTTTGCCATATGATTAACAGCTTCCCAGTTCCACT
GTACAGAGCTTTCTTTCCAAGACACTTACTAACTCCAAAATCTTACCAGT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_a03.g1 MSMg01no081_a03.g1 CHROMAT_FILE:
MSMg01no081_a03.g1 PHD_FILE: MSMg01no081_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:04 2005
         (508 letters)



>mm_chrX_36772306_36773213
          Length = 908

 Score =  959 bits (496), Expect = 0.0
 Identities = 505/508 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtttagttctgtataatcacaagagatttccaaacctaaatttgaaatagtctttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tttgtttagttctgtataatcacaagagatttccaaacctaaatttgaaatagtctttta 649

                                                                       
Query: 61  aaagatttgttaatgtacatggggaattttataattcattgatattttacagggaattat 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 aaacatttgttaatgtacatggggaattttataattcattgatattttacagggaattat 589

                                                                       
Query: 121 cattttcattcaaaacgcatctactgggggttttgcaaaggataattgcaagtgttgtag 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 588 cattttcattcaaaacgcatctactgggggttttgcaaaggagaattgcaagtgttgtag 529

                                                                       
Query: 181 agaaaagaataaggtatccaaactctgtcttaaagaaggtagcaacaaaatattaaaatc 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 528 agaaaagaataaggtatccaaactctgtcttaaagaaggtagcaacgaaatattaaaatc 469

                                                                       
Query: 241 atagtatctgaataaattagaaaattgatgcaatatttatcaagggtaatatgtaactaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 atagtatctgaataaattagaaaattgatgcaatatttatcaagggtaatatgtaactaa 409

                                                                       
Query: 301 gtgcaaagggattgctaagagttcaaaaaagaatataatttgtttgcttagagttgagga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gtgcaaagggattgctaagagttcaaaaaagaatataatttgtttgcttagagttgagga 349

                                                                       
Query: 361 gaagatatgagcctcaactgggatattttttaaaccatggcttagtaaaactgtaattag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gaagatatgagcctcaactgggatattttttaaaccatggcttagtaaaactgtaattag 289

                                                                       
Query: 421 gacaaaattctgatacattaaacaattaatcttgaccataaagctgatgcaaaggggttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gacaaaattctgatacattaaacaattaatcttgaccataaagctgatgcaaaggggttc 229

                                       
Query: 481 atgctgaattttaagtaccagagagcct 508
           ||||||||||||||||||||||||||||
Sbjct: 228 atgctgaattttaagtaccagagagcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)