BAC Information

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BAC

Clone NameMSMg01-081E04
ChromosomeX (Build37)
Map Location 143,707,700 - 143,708,210
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666730, EG245663, Htr2c
Downstream geneIl13ra2, V1rb10, Lrch2, LOC100039462, LOC666789, LOC434863, EG623995, EG624023, LOC666184, LOC100039511, LOC666812, LOC100039519, LOC434864, EG624096
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081E04.T7 (MSMg01no081_e04.b1)MSMg01-081E04.TJ (MSMg01no081_e04.g1)
ACCAG301904AG301905
length701702
length of high quality
(start - end)
521 (40 - 560)458 (69 - 526)
definitionCHROMAT_FILE: MSMg01no081_e04.b1 PHD_FILE: MSMg01no081_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:24 2005CHROMAT_FILE: MSMg01no081_e04.g1 PHD_FILE: MSMg01no081_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:24 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
AAAACACTCCAGGCATTCTTCTCTGGTAAGGTTCAGACCTACAGCTTAAG
AACCACAGATCTTCTAAACTACTGTATGTACCAAGGGGACTTCTGATCTG
CCCATTCTGAACCAGGGATCCTCAGATCATCCCCAATAGCCTAAGTGAAC
TTCAACTTAACTGTTTAGAACCAATGTGCTGGGGTTGGAGAGATGGCTCA
GCAGTTATAAACACTGACTGCTCTACCACAGGTCCTGAGTTCAATTCTCA
GTAACCACGTGTTGTCTCACAACCATCTGTCATGGGACCCGATGCCACCT
TATGGTGTGTCTGAAGACAATATCAGTATACCCACACACATGAAAAATAA
CCGATGTGACTCACAACTTCCACCAATAACTCAAGGGGGTTTCAGATGTA
ACCCCTGAAATCAAATATGTTAGAAACTCCCCAGTATTGAAGGCAGCATT
AACATATGATAACCATAAACCTCAGAAATTCTTTAATTCCCCTCAGAATT
ACCTCTTAAGAACAAAGGTGTCACATAGGTCCTCAATAACTGAAGATGCC
CTGATCCATATGACATGATACACAAAGGACTTCAGACCTCAATATTATTT
TAAGAAGGTCACCAACATGGCTCTTTTACTATCACCATGCATTTCCATTG
T
AACGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACAGACCATATGAAGCTTAAGAAGAGGGAAAG
CACAAATGTGGATGCTTCAATCTCCAATCTCACTTAGAACATGGAACAAC
ATAATCATTGGAGGCAGAGGTATGGAGGGACATGTGTTTAACAGGGGAGG
TGGAGGGAAGAAAAGGAGGCAGTATCTGGTATGAGGGAGACAGGAAAGAA
GCCTTGAGGGTCAAGAGAATGAATAGAAATATCAAGTAGTGTGACGTGAG
GAATAGGAAGAACCACTACTAAATCCCAGACAGCATGGTTGTGGGAGCCT
CTCAGGACCCAGTGAGGATGACATTAGACGAAATGCCCAACAGCAGTGTG
ATAGAACCTGAAGAGACCATTTCAAGTACAAAGTAAAATGGATCTATTTG
AATATATAGAAACGTTCATATAATTTTTGCCCTTAGATATGCATAGGTGT
TCTATTATATTGTTTCATGTGTGGTAAATCGTGATTATGAGGGCATATCT
CTGATGTACAGCCAGTTTGATTACGGTGATTTTTTTTTCAATGCAGTATG
AATCCTTTTTCTACTAAGGTTGCAAACCTGTACCCCTCTTTTGAAAGGAG
AGCACCAGGCTTTTGAAAGTTGCCCCATGACCTGCACGTTCATGACGTGA
CT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_e04.b1 MSMg01no081_e04.b1 CHROMAT_FILE:
MSMg01no081_e04.b1 PHD_FILE: MSMg01no081_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:24 2005
         (521 letters)



>mm_chrX_143707497_143708416
          Length = 920

 Score =  609 bits (315), Expect = e-178
 Identities = 465/515 (90%), Gaps = 8/515 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaaaaacactccaggcattcttctctggtaaggttcagacctacagcttaagaa 63
           |||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 204 ggaattcaaatacactccaggcattcttctttagtaaggttcagacctacagcttaagaa 263

                                                                       
Query: 64  ccacagatcttctaaactactgtatgtaccaaggggacttctgatctgcccattctgaac 123
           |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 264 ccacagatcttccaaactactgtatggaccaaggggacttctgatctgcccattctgaac 323

                                                                       
Query: 124 cagggatcctcagatcatccccaatagcctaagtgaacttcaa-cttaactgtttagaac 182
           ||||||||| || ||| | ||||||||||||||||| ||| || |||| |||| ||||||
Sbjct: 324 cagggatcc-catatcttacccaatagcctaagtgacctt-aatcttacctgtctagaac 381

                                                                       
Query: 183 caatgtgctggggttggagagatggctcagcagttataaa-cactgactgctctaccaca 241
           ||||||||||||  || ||| ||||||||||||||| ||| ||||||||||||| |||||
Sbjct: 382 caatgtgctgggactgaagatatggctcagcagtta-aaagcactgactgctcttccaca 440

                                                                       
Query: 242 ggtcctgagttcaattctcagtaaccacgtgttgtctcacaaccatctgtcatgggaccc 301
           ||||||||||| ||||| ||| |||||| || || ||||||| ||||||| ||| |||||
Sbjct: 441 ggtcctgagttaaattcccagcaaccacatggtggctcacaatcatctgtaatgagaccc 500

                                                                       
Query: 302 gatgccaccttatggtgtgtctgaagacaat-atcagtatacccacacacatgaaaaata 360
           |||||||| |||||||||||||||||||||| | ||||||||||||| |||||||| | |
Sbjct: 501 gatgccactttatggtgtgtctgaagacaatga-cagtatacccacatacatgaaataga 559

                                                                       
Query: 361 accgatgtgactcacaacttccaccaataactcaagggggtttcagatgtaacccctgaa 420
           ||| ||||| |||||||||| |||||||||||||||||||||||||||||| ||||| ||
Sbjct: 560 acctatgtgcctcacaactttcaccaataactcaagggggtttcagatgtaccccctcaa 619

                                                                       
Query: 421 -atcaaatatgttagaaactccccagtattgaaggcagcattaacatatgataaccataa 479
            |||||||||||||||||||||||||| ||||||| | |||||||| |||| ||||| ||
Sbjct: 620 catcaaatatgttagaaactccccagtgttgaaggtatcattaacacatgagaaccagaa 679

                                              
Query: 480 acctcagaaattctttaattcccctcagaattacc 514
           |||||||||||||||||||| |||| |||||||||
Sbjct: 680 acctcagaaattctttaattgccctgagaattacc 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 920
Length adjustment: 10
Effective length of query: 511
Effective length of database: 910
Effective search space:   465010
Effective search space used:   465010
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)