Query= MSMg01no081_i17.b1 MSMg01no081_i17.b1 CHROMAT_FILE:
MSMg01no081_i17.b1 PHD_FILE: MSMg01no081_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:47 2005
(473 letters)
>mm_chr19_34200277_34201154
Length = 878
Score = 553 bits (286), Expect = e-162
Identities = 420/486 (86%), Gaps = 40/486 (8%)
Strand = Plus / Minus
Query: 15 tttctgttaaccaattttcctccatattcctctaaaccctacccccatgggcttgccggg 74
|||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||| ||
Sbjct: 832 tttctgctaaccaattttcctccatattcctctaaaacctacctccatgggcttgccagg 773
Query: 75 aagtgagaaaacttaatgtatgtgcttt------------------tttcata-caattt 115
|||| ||| ||||||||| |||||||| ||||||| || |||
Sbjct: 772 aagtaagacaacttaatgggtgtgcttttttttttgttttgttttctttcatagcagttt 713
Query: 116 catacgttgtgacattcagtacccttcttaaaagttgtcttacattgcttacctaaagac 175
|||| |||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 712 tatactttgtgacattcagtaccctttttaaaag----------ttgcttacctaaagac 663
Query: 176 cacacctgtcatcacatttttat--cactgtttctgggggcactccgtggattgctattg 233
||||||||||||||||||||| | ||||||||| ||||||| |||||||||||||||||
Sbjct: 662 cacacctgtcatcacattttt-tgccactgtttccgggggcattccgtggattgctattg 604
Query: 234 gtaagagccacagttccttttcctaagctagcatgttttggatgagaccagatcatatgc 293
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 gtaagagccacagtttcttttcctaagctagcatgttttggatgagaccagatcatatgc 544
Query: 294 atggattcctcaaattccttccatggtattgctttgcatttgaagtga--ttttcaagct 351
| ||||||||||||||||||||||||||||| |||||||||||||| |||| | ||
Sbjct: 543 acaaattcctcaaattccttccatggtattgctctgcatttgaagtgattttttga--ct 486
Query: 352 attcatgtagtgcagttgcttgcattgtagtgttttccacaatgctcctaaaccccagag 411
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 attcatgtagtgtggttgcttgcattgtagtgttttccacaatgctcctaaaccccagag 426
Query: 412 ttctttaaaa----ctgtttcattatcagttggttctgtgtaattatattgggctaaata 467
|||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 425 ttctttaaaatagtttgtttcattatcagtcggttttgtgtaattatattgggctaaata 366
Query: 468 atctat 473
| ||||
Sbjct: 365 acctat 360
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 878
Length adjustment: 10
Effective length of query: 463
Effective length of database: 868
Effective search space: 401884
Effective search space used: 401884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no081_i17.g1 MSMg01no081_i17.g1 CHROMAT_FILE:
MSMg01no081_i17.g1 PHD_FILE: MSMg01no081_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:47 2005
(502 letters)
>mm_chrX_147890301_147891203
Length = 903
Score = 949 bits (491), Expect = 0.0
Identities = 500/503 (99%), Gaps = 1/503 (0%)
Strand = Plus / Minus
Query: 1 ctggagactctagcctaattaccggagccacaatctggcttggaatctagaaagctctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 ctggagactctagcctaattaccggagccacaatctggcttggaatctagaaagctctct 644
Query: 61 gaact-ctgtcctccattggggagagaacagtataagcatccctaccaccactatttttc 119
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 643 gaactactgtcctccattggggagagaacagtataagcatccctaccaccaatatttttc 584
Query: 120 ttcaagctcaagttcctttgagttttacaatgattctggaatggcaggacttaacaaatc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ttcaagctcaagttcctttgagttttacaatgattctggaatggcaggacttaacaaatc 524
Query: 180 ctgtgacttgtttagcaattatattctaaatatctaggatatgtaggtaggaactctgta 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ctgtgacttgtttagcaattatattctaaatatctaggatatgtaggtaggaactctgta 464
Query: 240 accgacaaatcttctctttgcctagaacattctgtactgtcttttctgctcattgttcac 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 accgacaaatcttctctttgcctagaacattctgtactgtcttttctgctcattgttcac 404
Query: 300 ttgggaaatttattcataatttattacctagtttatattttccgatactatgttatttag 359
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 403 ttgggaaatttattcataatttattacctagtttatattttctgatactatgttatttag 344
Query: 360 cacataattcatagtttgtatctttcccaaagtgttctttttaccaatacttttttgcct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 cacataattcatagtttgtatctttcccaaagtgttctttttaccaatacttttttgcct 284
Query: 420 tgaagactactttttatagtttcttgatttagctttacttaagcttttatttcaaagcct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tgaagactactttttatagtttcttgatttagctttacttaagcttttatttcaaagcct 224
Query: 480 tttatctttatttcttggcaaat 502
|||||||||||||||||||||||
Sbjct: 223 tttatctttatttcttggcaaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 903
Length adjustment: 10
Effective length of query: 492
Effective length of database: 893
Effective search space: 439356
Effective search space used: 439356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
