BAC Information

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BAC

Clone NameMSMg01-081I18
ChromosomeX (Build37)
Map Location 142,800,707 - 142,801,071
singlet/doubletsinglet
Overlap genenone
Upstream geneAmot, EG434860, LOC100039313, LOC623697, LOC623731, LOC237096, LOC100039558
Downstream geneEG666730, EG245663, Htr2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081I18.T7 (MSMg01no081_i18.b1)MSMg01-081I18.TJ (MSMg01no081_i18.g1)
ACCAG302124AG302125
length716711
length of high quality
(start - end)
373 (36 - 408)445 (63 - 507)
definitionCHROMAT_FILE: MSMg01no081_i18.b1 PHD_FILE: MSMg01no081_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:47 2005CHROMAT_FILE: MSMg01no081_i18.g1 PHD_FILE: MSMg01no081_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:47 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTGG
TATCCTGAAATCTGAGCTTAGTTCTGCATCCAGGTCCAAGTCAGCTCTTC
TTTCTTAAATGTTATTTTATTTTTTTTATTTTTTCAAGAGATGCTATTTT
TATTATAATTAGGAATCTTAATACTAATAATCCATGTAGTTTTGGTCTAG
CACATATGAATGTTTGTTAAAAAGCACCTAAAACAAAGGCAAAGCTTTCT
CACCTAAGCAAAAGTGGAAATGCATACCTCTTAAGTCACAAATGACATAC
TAGAAGGTATAAAACATGTTTAAATGTTATTTTAATTATGTATAATTAGC
ACGCTGCATTATAAGCAGAGGAAGGAAGGCAAAGGGTGGTTAATAAGGTT
ACATCCTAAAGAGAGCAAACAAATGCGAAGATATCCCCTAGGATAGTTTA
TGTTCTCTGCCATTTATTTCTTGCCCAACATTCTGGGGATCAATAAGTCT
GAGGCTGTCACCATTACAGTCTTAGGTTTTAACCCTGTTGTGGGATTCAT
GCATGCACCTCAATAAAGTTATATCATTTTCTTTTTTATCAAGAATGTCC
CATAAGTCCTTGGGCCTGGTACCCTTGAAAAGATTTTAGTATATTCTTGT
AATCTTATAGTCTCAAGTTATTTCAAATAATTTATATAGCGGCACCTCGC
TCCATTCCCACGATTA
GGATGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCATCATGAGATATGCTT
TTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTGGATTGGGC
GAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGCTTCTGTT
AGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAATCTCTGGAGTTAG
TTGTTATAGTTGTCTTTGTTAAAAGATTGTTCCTCTGTTGATTTTGTTAC
CCTCTATCAGCATGCGTGGGAGACAAGCTCTCTTCTCTGAGTTTCAGTGG
TCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCTCAGGGAAGGTGTACAG
TTATCTGGTGTTTGGACCTCCTCCTGGCTGAAGGTGAAGGCCCAAAACAG
GATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGGCCAGTTGTC
TGGAGTCGAAGATGTCGCAGCCTCAGAAGCTCTGTGGCTCTTGCCGGGAA
GGTGGTTGGTTGTCTGGAGCTGATGATGGTGTCGCCCCAGAATCTCTGCG
ACTCTCTCGCCTGTCCCAGAAACAGCTGGCACTCTGTTTTCCACACGGTC
ATCCGTGTAGCCCGTCCTCCGCGGAGTCCCCGGACCCTATATGGCTCCCG
CCGGCGCCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_i18.b1 MSMg01no081_i18.b1 CHROMAT_FILE:
MSMg01no081_i18.b1 PHD_FILE: MSMg01no081_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:47 2005
         (373 letters)



>mm_chrX_142800408_142801180
          Length = 773

 Score =  661 bits (342), Expect = 0.0
 Identities = 360/366 (98%), Gaps = 1/366 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctggtatcctgaaatctgagcttagttctgcatccaggtccaagtcagctctt 64
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 gaattctctggtagactgaaatctgagcttagttctgcatccaggtccaagtcagctctt 605

                                                                       
Query: 65  ctttcttaaatgttattttattttttttattttttcaagagatgctatttttattataat 124
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 604 ctttcttaaatgttatttta-tttttttattttttcaagagatgctatttttattaaaat 546

                                                                       
Query: 125 taggaatcttaatactaataatccatgtagttttggtctagcacatatgaatgtttgtta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 taggaatcttaatactaataatccatgtagttttggtctagcacatatgaatgtttgtta 486

                                                                       
Query: 185 aaaagcacctaaaacaaaggcaaagctttctcacctaagcaaaagtggaaatgcatacct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aaaagcacctaaaacaaaggcaaagctttctcacctaagcaaaagtggaaatgcatacct 426

                                                                       
Query: 245 cttaagtcacaaatgacatactagaaggtataaaacatgtttaaatgttattttaattat 304
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 425 cttaagtcacaaatgacatactagaaggtagaaaacatgtttaaatgttattttaattat 366

                                                                       
Query: 305 gtataattagcacgctgcattataagcagaggaaggaaggcaaagggtggttaataaggt 364
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gtataattaacacgctgcattataagcagaggaaggaaggcaaagggtggttaataaggt 306

                 
Query: 365 tacatc 370
           ||||||
Sbjct: 305 tacatc 300


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)