BAC Information

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BAC

Clone NameMSMg01-082D02
ChromosomeX (Build37)
Map Location 147,890,684 - 147,891,003
singlet/doubletsinglet
Overlap geneORF34
Upstream geneAlas2, Apex2, Pfkfb1, Tro, LOC100039716, Maged2, Itih5l, LOC667021, Gnl3l, Fgd1, Tsr2, LOC100040221, EG667027, Wnk3, LOC675278, LOC623804
Downstream geneLOC100039760, Phf8, LOC385448, LOC237116, Huwe1, LOC675514, Hsd17b10, Ribc1, Smc1a, LOC100040394, Iqsec2, Jarid1c, 2900056M20Rik, Tspyl2, Gpr173, LOC207318
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082D02.T7 (MSMg01no082_d02.b1)MSMg01-082D02.TJ (MSMg01no082_d02.g1)
ACCAG302619AG302620
length699682
length of high quality
(start - end)
74 (99 - 172)319 (74 - 392)
definitionCHROMAT_FILE: MSMg01no082_d02.b1 PHD_FILE: MSMg01no082_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:36 2005CHROMAT_FILE: MSMg01no082_d02.g1 PHD_FILE: MSMg01no082_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTTGTCCCCATTCCAGACTGTGGTCTTTGCTTCTGTTATCCA
ATTTTCCTCCATATTCCTCTAATCCCTACCCCCATGTGCTTGCCGGGAAG
TGAGAAAACTTAATGTATGTGCTATCTTTCATACTATTTCATACGTTGTG
TACTTCAGTACCCTTCTTAAAAGTTGTCTTACATTGCTTACCTCACGACC
TCACCTGTCATCACATTTTTATCACTGTTTCTGGCTGCACTCCGTTTATT
GCTACTGTTACCAGCCTCTGTTCCTTTTCCTAATATAGCATGTTTTGGAT
GACACTACATCATATGCCTGTGTTACTCATATTCCTACCATGCTTTTGCT
TTGCTTACGAAGTGATTTTCAATCTATTTCCGTATATGTACCTTCTTGCA
TTGTATTGTTTTCCTCCTTGCCTCTTAATCCCCACATCCCTCTTATTCTG
TTATAATTATCCTTGGCTATCCGCGATTACTATTTAGTTTTAAATTTATC
CATAATATGTATTCCCCTTATATGTTTCAGACACTGTATTTCCCTCCATT
TTGATTACTCTTACAACTTCGGTATCCATATTCTAAATATAATTTTCCTC
CTGTTCATACCTCAATTTTCACTTATCCTCACCCTTCTCCCCTTTTCTT
TTCAATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGGAGACTCTAGCCTAATTACCGGAG
CCACAATCTGGCTTGGAATCTAGAAAGCTCTCTGAACTCTGTCCTCCATT
GGGGAGAGAACAGTATAAGCATCCCTACCACCACTATTTTTCTTCAAGCT
CAAGTTCCTTTGAGTTTTACAATGATTCTGGAATGGCAGGACTTAACAAA
TCCTGTGACTTGTTTAGCAATTATATTCTAAATATCTAGGATATGTAGGT
AGGAACTCTGTAACCGACAAATCTTCTCTTTGCCTAGAACATTCTGTACT
GTCTTTTCTGCTCATTGTTCACTTGGGAAATTTATTCATAATTTATTACC
TAGTTTATATTTTCTGATACTATGTTATTTAGCACATATTTCATAGTTTG
TATCTTTCCCATAGTGTTTCTTTTTACCAATACTTTTTTGCCTTGTAAAC
TACTTTTTATAGTCTCTTGATTTAGTTTTACTTCAAGTTTTATTTCACAG
CCTCTTTATCTCTTATTACTTTGTACTCGCGCACCATAATCCATCTCAAA
TGTTTGTATCCAGGGTACTCCATGAACGGCATAATACACCAAGACTTCGA
CTTATACATACGGGTGGAGTACAAAAACAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_d02.g1 MSMg01no082_d02.g1 CHROMAT_FILE:
MSMg01no082_d02.g1 PHD_FILE: MSMg01no082_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:36 2005
         (319 letters)



>mm_chrX_147890484_147891203
          Length = 720

 Score =  603 bits (312), Expect = e-177
 Identities = 318/320 (99%), Gaps = 1/320 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggagactctagcctaattaccggagccacaatctggcttggaatctagaaagctctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ctggagactctagcctaattaccggagccacaatctggcttggaatctagaaagctctct 461

                                                                       
Query: 61  gaact-ctgtcctccattggggagagaacagtataagcatccctaccaccactatttttc 119
           ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 460 gaactactgtcctccattggggagagaacagtataagcatccctaccaccaatatttttc 401

                                                                       
Query: 120 ttcaagctcaagttcctttgagttttacaatgattctggaatggcaggacttaacaaatc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ttcaagctcaagttcctttgagttttacaatgattctggaatggcaggacttaacaaatc 341

                                                                       
Query: 180 ctgtgacttgtttagcaattatattctaaatatctaggatatgtaggtaggaactctgta 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ctgtgacttgtttagcaattatattctaaatatctaggatatgtaggtaggaactctgta 281

                                                                       
Query: 240 accgacaaatcttctctttgcctagaacattctgtactgtcttttctgctcattgttcac 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 accgacaaatcttctctttgcctagaacattctgtactgtcttttctgctcattgttcac 221

                               
Query: 300 ttgggaaatttattcataat 319
           ||||||||||||||||||||
Sbjct: 220 ttgggaaatttattcataat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 720
Length adjustment: 9
Effective length of query: 310
Effective length of database: 711
Effective search space:   220410
Effective search space used:   220410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)